XLOC_013434


Basic Information

Item Value
gene id XLOC_013434
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 24047486 ~ 24083836 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027317
AAAGCATTGAGGACTAAAATCACCTCTCTGGTTGCCCTTTGACTGAAAATGACAATCAAAAGGCTGATTACTCATGGATTTTTGATGAGGTCCATCAAGGCAGCTGATGTATTGCTCTTCTTCAGACTACCTGCTCTAGTCTCAACATGTTGCAGTCTGACAGTAGTTGGTCGGAGTCTTTTGGCACATCTCCACAGGGCTATCAGATGAGACACAAATGAACTGAGCCAAGACACAAGAGACAACACCAGAGTCTTGGACTCAGATACACTTCCTCCTCATGTTAACCAGCCAGCAACAGTATCCTTTCCACATGCAGTCAATGTAATTGTGTGGTTTACATTTATGGAACATTGAGGAACGCAtgacaaaaaaatctattatCCGGTTGTTTTCTGTGTCTAAATACATGGAAAATCCTGTCTTAATTGATAGCATTCCATCATAGCTTTTAAAAGTTTCATGGGTAGCGGATGAGAAACAGAATCAGATTCCATTAATAGTGATTGCCAACTTAGCATCAAATCTTTGGAGGTTAGTGGTCAAATAGTTAACAGTTCATTGCTGACCTGGAATGTAAGTGTTTCAGACAGCTTGGAGGACATTCTACTTATTCCAGTCCAGTGAGCTTTAGCTTTGTTGAGGTGATTGAGGCTGTAGTCTTTAGTTCTTTCTTCATCCACTCttcccaaaacacacacacacacacgcacacaaatagTAGAAGGTGAAAAAATAGAAAGGAAACTGTCTTATAGCATACGCCACCTTCTGAACACCATAATCTTTGTTCCTTTGTTTGTCTGAGTAGAGGTAGCCTCTGCTACTAGGGTTTTATATCACTTTCTAATccaaaataaacagcagaaataCTCATGCCAATTAAACATGCATGATTTCCAGTTAAAGCCGCCTGTTGTAATGGAATTTGACAGTCCTCTTAATTGGGCACTCAGATGCAGGCACTCAGATccacttttaaagggatagttcacccaaaaattgctATTTTGGTGCCATTTAAATCATCTTagttccaaactttttttatttatttacttttattttctgttgaacacaatggaagATTAAAAAATACTTAAGATATATATAAGAAAGTACAATGCTATTTCATGGAAATTCCTAACTTTTtgaattagtggctaatttgtaatcATTAAGATCTTATTTGAACTATTTAGTGCAATTTGCTTATACCATTTGAGAAAAGA
>TCONS_00027318
CCCAAGTGCACAATGTACCAATCCATACAACTGACCATCTTAAAGCTGATTACTCATGGATTTTTGATGAGGTCCATCAAGGCAGCTGATGTATTGCTCTTCTTCAGACTACCTGCTCTAGTCTCAACATGTTGCAGTCTGACAGTAGTTGGTCGGAGTCTTTTGGCACATCTCCACAGGGCTATCAGATGAGACACAAATGAACTGAGCCAAGACACAAGAGACAACACCAGAGTCTTGGACTCAGATACACTTCCTCCTCATGTTAACCAGCCAGCAACAGTATCCTTTCCACATGCAGTCAATGTAATTGTGTGGTTTACATTTATGGAACATTGAGGAACGCAtgacaaaaaaatctattatCCGGTTGTTTTCTGTGTCTAAATACATGGAAAATCCTGTCTTAATTGATAGCATTCCATCATAGCTTTTAAAAGTTTCATGGGTAGCGGATGAGAAACAGAATCAGATTCCATTAATAGTGATTGCCAACTTAGCATCAAATCTTTGGAGGTTAGTGGTCAAATAGTTAACAGTTCATTGCTGACCTGGAATGTAAGTGTTTCAGACAGCTTGGAGGACATTCTACTTATTCCAGTCCAGTGAGCTTTAGCTTTGTTGAGGTGATTGAGGCTGTAGTCTTTAGTTCTTTCTTCATCCACTCttcccaaaacacacacacacacacgcacacaaatagTAGAAGGTGAAAAAATAGAAAGGAAACTGTCTTATAGCATACGCCACCTTCTGAACACCATAATCTTTGTTCCTTTGTTTGTCTGAGTAGAGGTAGCCTCTGCTACTAGGGTTTTATATCACTTTCTAATccaaaataaacagcagaaataCTCATGCCAATTAAACATGCATGATTTCCAGTTAAAGCCGCCTGTTGTAATGGAATTTGACAGTCCTCTTAATTGGGCACTCAGATGCAGGCACTCAGATccacttttaaagggatagttcacccaaaaattgctATTTTGGTGCCATTTAAATCATCTTagttccaaactttttttatttatttacttttattttctgttgaacacaatggaagATTAAAAAATACTTAAGATATATATAAGAAAGTACAATGCTATTTCATGGAAATTCCTAACTTTTtgaattagtggctaatttgtaatcATTAAGATCTTATTTGAACTATTTAGTGCAATTTGCTTATACCATTTGAGAAAAGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0043169 cation binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027317 False 1232 lncRNA 0.37 2 24047486 24079244
TCONS_00027318 True 1214 lncRNA 0.37 2 24047486 24083836

Neighbor

gene id symbol gene type direction distance location
XLOC_013432 nr2f2 coding downstream 24225 23868650 ~ 24023261 (-)
XLOC_013433 NA coding downstream 162832 23877479 ~ 23884654 (-)
XLOC_013431 NA coding downstream 213577 23686575 ~ 23833909 (-)
XLOC_013430 NA coding downstream 439458 23439462 ~ 23608028 (-)
XLOC_013429 NA coding downstream 644033 23401130 ~ 23403453 (-)
XLOC_013435 si:ch211-147m20.3 coding upstream 189592 24273428 ~ 24476910 (-)
XLOC_013436 CU855551.1 coding upstream 232345 24316181 ~ 24316299 (-)
XLOC_013437 NA coding upstream 413788 24497624 ~ 24561884 (-)
XLOC_013438 NA coding upstream 652523 24736359 ~ 24759440 (-)
XLOC_013439 AL935295.2 coding upstream 657663 24741499 ~ 24746401 (-)
XLOC_013384 BX323829.1 misc downstream 4505255 19542102 ~ 19542231 (-)
XLOC_013428 NA non-coding downstream 851932 23186729 ~ 23195554 (-)

Expression


Co-expression Network