XLOC_013442 (st8sia2)


Basic Information

Item Value
gene id XLOC_013442
gene name st8sia2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25027495 ~ 25051846 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026539
TTTCGGACAGACAGTTGACTTGTCGCTGTAACTCTGTCGCATCGCTCGCACCTGGATTTGGGATTACATGTTTGAAGAAAAATAATGTTAGGTTTCATTTCAAACATTATGCTTCAGTGTTAAAACAATAGAAAGTCCTCAACCGTAAAAAACCAAACGTGTGCGTCTTTGTCAAACAGCAACAAAGAGACCAAGGCGGAGAGAGGATAGCCCACATCTTCAATTTCAAACCCACGCCTTGTGTCTGTGTATACCAATAACGCAGTTTGCTTTTCATATATGAGTTTATGCACCTTGCAGGCAAAGTTTCAAGGGAACTGCCTGGCTTGCAATCTATGTAGTAGCGGCAGGAGGAGTAGAAGAGAAGAAAGGACGTGCACGTTTGTCTCACCTCTCTACTACTTTGGTGAAGGTGGAAGAAGCGGACAGACGCGATAATAATGCAGACAACTGTTCGTTAACCTGCACGGACATGGTCCAGCTTTGTCGAGGAGCCGGAGGAGCATTACATGTGTTGCCCTGCGTTAGGAACCAGCGTGAAAgaggagaacacatttctattgCGCTTTATAGTTCAACGCATTTGTAGAATCGCGCATCGGTCAAGTCATGTCTTTTGAATTCCGAATACTGATGTTTGGAATCGGGACAGCGCTGGTTATATTTGTGATTATAGCTGATATATCGGAAGTGGAGGAAGAAATCGCGAACATTGAGGATTCACGGAAATTCCACTTAAAAAGTGTCGCCCTTCAGTCCAACAGaAGTTCAGATCTGAATGCTGCCCCTACTTCTCTAGTCACATATAGAAAGAGCAAAGTCTCCTCTCTAGCTTCACCGTCTGACATAAAGCGCAAAACCAGCAATTCATCCTCATCTGAATGGACTTTCAACAGAACCTTGTCTAACCTCATCAGgaaaaacattttgaaattccTGGATGCTGAGAGGGACATCTCAATTCTGAAGAGCACCTTTAAACCCGGTGATGTAATTCATTATATATTTGACCGTCAGAGCACCACAAACATCTCAGAGAATCTGTACCACCTTTTACCAACTGTGTCGCCCATGAAGAATCAGCATTACAGAAAGTGTGCCATCGTAGGGAACTCTGGCATACTACTGAACAGCAGCTGCGGCAGAGAGATTGACTCGCACGACTTTGTTATTAGGTGTAACTTGGCTCCGGTGGAGGAGTATGCTGCTGACGTGGGCCTGCGCACCAGCCTGGTGACTATGAACCCCTCAGTGGTGCAGCGTGCCTTTCAGGACCTGAACAGCGAGGAGTGGGTGCAGCGTTTCGTCCAGCGGCTGCAAAGCCTTAGTGGGAGTGTGTTGTGGATTCCTGCCTTCATGGCTAAAGGAGGAGAGGAGCGAGTGGAGTGGGCCATTCGTCTCATTCTCCTGCATACGGTGAACGTCCGCACCGCCTTCCCCTCTCTGCGTCTGCTCCATGCTGTCAGAGGtTACTGGCTGACCAACCATGTCCAGATCAAACGTCCCACCACTGGACTGCTGATGTACACCATGGCTACTCGCTTTTGTGATGAGATCCACCTGTATGGCTTCTGGCCCTTCGCTCACGACCCTGACGGCAAACCAGTCAAGTATCACTACTATGATACACTAACGTACCACTACACATCTAGTGCCAGTCCACACACAATGCCTCTGGAGTTTAGGACCTTAAGTGCTCTTCACAGACAGGGGGCGCTGCGGCTGCACACGGGACCATGCAAACCTCCTACATGAATTCTTTAAACACTGgaccttacacacacacaaaggaaggaaatgctgtgaaaaagtCTGGAACAACTGAATATTTCAGGTAAATCTTTGACCATAAGTGAGAACGCAATATATGAAGAGGGGATGTTTTCCAAAGTGttcaattttaaaaaggtttttaatcCCCCATGCTGTTTGATAAGAAGCCCCTTTCTGGTGTTAGTTTTTTTTCATATCATTTGTTTTTTACATCATTCATTAAGTGTCTTAGTTTATTAAATGCCAAATATGGCCACAAGATGGAAGCAAATCGTAGAGGAGaaaatacagggtttctgcaggtttcataaaAAAGACTTTAGGACTAATTCAGAAACATGATGaatgtcatttcatttttttttttatttcaaagaccTAAATCacaaatattgattttgttttcttgtcatactgttactgtaaactttattgtCACCTTTTAGGAGAATTTTTTTCTGCAGCATACTAGATTTACAACACATATATCACACCACACACTTAagacaaacattaaacaacattagtagtacaaaaaaaaaaaaaaa

Function

symbol description
st8sia2 Enables sialyltransferase activity. Predicted to be involved in N-glycan processing; oligosaccharide metabolic process; and protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including nervous system; neural keel; neural tube; pleuroperitoneal region; and unfertilized egg. Orthologous to human ST8SIA2 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2).

GO:

id name namespace
GO:0009311 oligosaccharide metabolic process biological_process
GO:0006486 protein glycosylation biological_process
GO:0006491 N-glycan processing biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003828 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020919-4 Enables sialyltransferase activity. Predicted to be involved in N-glycan processing; oligosaccharide metabolic process; and protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including nervous system; neural keel; neural tube; pleuroperitoneal region; and unfertilized egg. Orthologous to human ST8SIA2 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2).

Ensembl:

ensembl_id ENSDARG00000018788

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026539 True 2321 mRNA 0.44 6 25027495 25051846

Neighbor

gene id symbol gene type direction distance location
XLOC_013441 NA coding downstream 30425 24990268 ~ 24997070 (-)
XLOC_013440 chd2 coding downstream 37915 24933473 ~ 24989580 (-)
XLOC_013438 NA coding downstream 268055 24736359 ~ 24759440 (-)
XLOC_013439 AL935295.2 coding downstream 281094 24741499 ~ 24746401 (-)
XLOC_013437 NA coding downstream 465611 24497624 ~ 24561884 (-)
XLOC_013443 slco3a1 coding upstream 22138 25073984 ~ 25177230 (-)
XLOC_013444 BX901968.2 coding upstream 106815 25158661 ~ 25158777 (-)
XLOC_013445 NA coding upstream 128693 25180539 ~ 25225436 (-)
XLOC_013446 plin1 coding upstream 177788 25229634 ~ 25279323 (-)
XLOC_013447 gnrhr4 coding upstream 339325 25391171 ~ 25402715 (-)
XLOC_013384 BX323829.1 misc downstream 5485264 19542102 ~ 19542231 (-)
XLOC_013435 si:ch211-147m20.3 non-coding downstream 550585 24273428 ~ 24476910 (-)
XLOC_013448 CR450716.1 non-coding upstream 464047 25515893 ~ 25516631 (-)
XLOC_013450 NA non-coding upstream 645429 25697275 ~ 25745621 (-)
XLOC_013455 dre-mir-184-1 non-coding upstream 1151457 26203303 ~ 26203389 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location