XLOC_013443 (slco3a1)


Basic Information

Item Value
gene id XLOC_013443
gene name slco3a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25073984 ~ 25177230 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026540
AAGCGCGCACACATCAGTCACAATGACCGAGGCGGAGAATCAAGCCCGCGGACTCCAGCGATGGTGGAGGAGGAATACGGGCAAACACTAACAGCACAGCCGCCCGGACAGACTCAGAGGACAACAAAGATGTTTGGAGTAAAAACCAGCGTCGATTTATCCTCCCTTTCAGCGACAGAGAGCAAAGGAGGAGAGTTTATTTCGTCTCCATTCATCGGCGGAGTTTCAATGAAAAGTCTGCAAGCTGTCAAACTGCGCGGAGTCTGAGTGTAAACAACAGTCGGAGTGTTCCCGATACATAAAGACACGCTTTATTTAGCGTTTTTTATAGGTTACAGTAGTTTTTCGCTTACCGCTCAGGATGCAGGTGAAAAAACAGAGGAGCTCCGAGGACCCTCAGCGGGATGATATTAAGAAAAAGCCCTCGTGTTTCTcgaatattaagatatttttagTGGCCGAATGTGCTCTGATGTTGGCACAGGGCACAGTGGGGGCATACTTGgtaagtgtgttgacCACGTTGGAGCGGCGCTTCAATCTTCAGAGCGCTGATGTTGGTGTCATCGCAAGCAGCTTTGAGATCGGCAACCTGGCCCTCATTCTCTTCGTTAGTTATTTTGGTGCTAAAGCCCACCGTCCTCGTTTAATTGGCTGCGGAGGCATTGTCATGGCTTTGGGAGCCTTGCTTTCTGCATTACCAGAATTCCTCGCCAGTCAATACAAGATCACAGACACTTGGAGCAAAGATCAGGGCCGAGATGTTTGCTCCAACACCTCAAAAGCTGATGAACCATGTGGAAACAGAGCAAACACCAACATGATGTACCTGCTTCTGATTGGAGCACAGGTGTTGCTGGGAATCGGCGCGACACCCGTTCAGCCCCTGGGTGTTTCCTACATAGACGATCACGTGCGGAAGAAAGATTCTTCGCTCTATATCGGTATCCTCTTTTCCACATTGGTGTTTGGACCTGCATGTGGTTTCATCCTGGGATCTGTCTGTACCAACTTTTATGTGGATGCTTTGTTCATCGACACAACTCAGCTGAACATCACCCCCGATGACCCGCGCTGGATTGGTGCATGGTGGGGCGGATTCCTCATCTGCGGTGCCTTACTCTTCTTCTCGGCCCTCTTCATGTTTGGTTTCCCTCAATCCCTGCCCAGCAAGGAGATGGAAGGAGTGCCTGAAAGTGAACAGGCCATGCTGCCCGCGTCTTTATCACAGGATTTTGAGAAATCCAAGCCCAGCAATGGAGTCGTGCAGAACTACCAGCCCAACAGCAACAGTCTGTCCTGCTGCCAGCAGCTCAGAGTTATTCCCAAGGTGACCAAGCACCTGCTGTCAAACCCAGTGTTCACTTGCATCGTCTTGGCCGCCTGTATGGAGATTGCGGTTGTTGCTGGCTTTGCTGCTTTCCTGGGCAAATACCTGGAGCAGCAGTTCAACCTCACCACCTCTTCTGCTAACCAGCTGCTGGGCATGACGGCGATCCCATGTGCCTGTCTGGGCATATTTCTGGGAGGTTTGCTGGTGAAGAAGCTGAATCTGTCTGCTCTGGGAGCCATTCGGATGGCCATGCTGGTCAATCTGATCTCCACCGCCTGCTACGTGTCTTTCCTCTTCCTGGGCTGTGACACGGGTCCTGTCGCCGGGGTGACCGTCGCCTATGGCAACGAgACACTGCAAGTAGGCCAGACACCGGAAGCCCCCTGCATGAGTCATTGTAACTGCTACACTTCATCCGTCAGCCCGGTTTGTGGCTCCAACGGTGTGACCTACTTGTCCTCATGTTTCGCCGGCTGCACCAGAGCCATCAGTACCGGACTACCAGCTCCGCTCTCTCAGAACCTGTCAGGATGTGCATGTATTTCCGGATACAATGACTTTGCCACAGCTGTGCCAGGCAAGTGCCCGCGGCCAGGCTGCCAGGAGGCCTTTCTCACCTTCCTGTGTGTGATCTGTGGCTGCAGTATGATCGGGGCAATGGCCCAAACCCCATCTGTCATCATACTCATCAGAACTGTCAGCCCAGAGCTGAAGTCATACGCCCTTGGAGTTCTTTTTCTGTTGCTGAGACTCTTAGGGTTCATTCCCCCTCCTTTGATATTTGGTGCTGGGATCGACTCCACATGTCTTTTCTGGAGTGCCGAATGCGGGGTCAAAGGTGCCTGTCTGCTGTACGATAACGTGACCTACCGGCACCTGTACATCAGCATGGCTATCGTCCTCAAAATCATGGCGTTCCTCCTCTACACCACCACCTGGCATTGCCTGCGCAGAAACTACAAGAAATACATCAAAAACATTGAGGGCTACCTCACCCCCACTGAAGTGTTCTCGTCCAGCATGAACCTGGACAGTCTCGGAAAGGACAGCAGTCAAAGTCAAGTCAACAGGACTAAATTTATATACAACCTGGAGGATCACGAGTGGTGCGAAAACATGGAGTCCGTTTTATAG

Function

symbol description
slco3a1 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in prostaglandin transport and sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including female organism; gill; liver; pleuroperitoneal region; and skeletal muscle. Orthologous to human SLCO3A1 (solute carrier organic anion transporter family member 3A1).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0015732 prostaglandin transport biological_process
GO:0043252 sodium-independent organic anion transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015347 sodium-independent organic anion transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8662 Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in prostaglandin transport and sodium-independent organic anion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including female organism; gill; liver; pleuroperitoneal region; and skeletal muscle. Orthologous to human SLCO3A1 (solute carrier organic anion transporter family member 3A1).

Ensembl:

ensembl_id ENSDARG00000018726

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026540 True 2467 mRNA 0.52 10 25073984 25177230

Neighbor

gene id symbol gene type direction distance location
XLOC_013442 st8sia2 coding downstream 22138 25027495 ~ 25051846 (-)
XLOC_013441 NA coding downstream 76914 24990268 ~ 24997070 (-)
XLOC_013440 chd2 coding downstream 84404 24933473 ~ 24989580 (-)
XLOC_013438 NA coding downstream 314544 24736359 ~ 24759440 (-)
XLOC_013439 AL935295.2 coding downstream 327583 24741499 ~ 24746401 (-)
XLOC_013445 NA coding upstream 3309 25180539 ~ 25225436 (-)
XLOC_013446 plin1 coding upstream 52404 25229634 ~ 25279323 (-)
XLOC_013447 gnrhr4 coding upstream 213941 25391171 ~ 25402715 (-)
XLOC_013448 CR450716.1 coding upstream 338663 25515893 ~ 25516631 (-)
XLOC_013449 si:ch211-13k12.2 coding upstream 386062 25563292 ~ 25646286 (-)
XLOC_013384 BX323829.1 misc downstream 5531753 19542102 ~ 19542231 (-)
XLOC_013437 NA non-coding downstream 512100 24497624 ~ 24561884 (-)
XLOC_013436 CU855551.1 non-coding downstream 757685 24316181 ~ 24316299 (-)
XLOC_013450 NA non-coding upstream 520045 25697275 ~ 25745621 (-)
XLOC_013455 dre-mir-184-1 non-coding upstream 1026073 26203303 ~ 26203389 (-)
XLOC_013456 CR352253.1 non-coding upstream 1118935 26296165 ~ 26299843 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_01335438_01381270 SLCO3A1 coding CI01000013 null 1335438 ~ 1381270 (+)
bowfin (Amia calva) AMCG00007876 LOC107601651,LOC107690372,LOC103369184 coding CM030123.1 CM030123.1 35649844 ~ 35665471 (-)