XLOC_013446 (plin1)


Basic Information

Item Value
gene id XLOC_013446
gene name plin1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25229634 ~ 25279323 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026543
GTGAAAATTTGTAATACTTGTTGAACTGTGACATCTAGTGGGCTGACAGCTGTGTTTGCTATGCTAACAAAAACGTTTTTAACCAGCAGCTCATTGAAGACTATTGGAGATGGCGTCTGAGAAAAAGGACACCGGTGAAGTTTTGAAGGATCAGAATGTATTTTTTCGAATCCTCAATATTCGGTCTGTCAATGCTGCTCTGGAATCTATTGAGAAGACGTACACTAGTACGAAGCAGTCTCACCCCATTATAAGCTCTGTTTGTGGCCTGTATGAGAAGGGTGTGAGTAGGGCTGGAAATCTGGCTGTGTGGAGCATGAAACCTGCCCTCCATGTGCTACAACCCCAGCTTGTAGCAGCAAACTCAATGGCCTGCAAAGGACTGGACCGACTGGAAGAGAAGGTACCAGCATTGCAATCTCCACCTGCAGAGCTGGCAGCAAAcataaaggggctaatgtctTCAACCCTGGAAGCCGCCAAGGATGGGATCACCTGTCCAATCAAACACAGCTCTAATGTTGTTCTGGACAAGGTTTCTTCAAGGTACCAGCAGAGTAAGAACACTCTCAGTGGCGGCATACAGTACATCCTGAACAGCAAGCTTGTCTTCTTGGCTGAACAGAGAGCCAGCAGGGCTCTAAGTCTAACAGAAAACCTGATCGACTGCATCCTTCCTGGAACTTCAGACAAGACAGAGAATGATAGGAGTACAGAAGAGCAACAGGAGTCTTATGTTGGAGCTTCTGACCCTATGCCGATCTTCAGCAGGCTTGGAGCTCTGGCAAGCACCATCTGCAGACGTGCCTTTGAAAAGACATTTGCACAGCTCCAGCTATCCACACACCAGGGTCACACACTGGTCAAGCGGATCCCTGGCCTGAATCCTCTGAGTAATGGGCTGGTCAGTGGATTAGGGCAGCGGTTATTGAAAGTCTATGGATCTGTGGTGGCTAATATAAAGAAAACCTCTCGAACCAGCTTCAATCTGGCTAAAGATGGAGTGAACATTGTCCTGGGCTCCTTCGGCACAGTCAGAGAGAAAACACTCCACAAGCTTTCTTATTATGGGCTGATTCCTAGGCGACTATCCAAGACAGAAGGAGGTTCCCAACCGGCTGAAAAAGATGGCGCAGAGGAATGTCTGTGTGGCTTCCTGGTGCTGGAATCCAATGTAGGAAACATAATTCACAGTCGCAATGACAACTCTGAGAAACAGCCTCTTAAGGTTACAGAACCTATGGATATTTCGGAGGAGACCCGTCAACTGAAGAAGAAGCTCATGAAGCAGATTCCTATGCAGCACAGAGTAGTTCTTGGTGGAAGTAATAAGAAGTCTCCAACCACAGAGCCAGTAGGAAGAAGAGTCTGACAGATCACATCCAAATCTCTTCCTCCTCTTCATATATTCGCACTGTTCAAAACAACATGAGTGCCACCATTAATTTGAGTGAGACTAGAGAGGAGAGAGACAGTTTTCTGCCTGCTGTGAGTGTTTGTTTAAAAAGTCATGTCCGGGTTAGGATTGTTATGAGTTCTGGCAGTGCAGTACATCATCACTTTTACCAGACGTTAAAGTCAACAGTACCTACATTTACAGAAATGATGTGACCATAGCACCATAGAatcttttagaaatattaataGATGGTGTCCTTTATTAAAATTGAGATTCATACATCctctgaaagctgaataataaGCTTTACATTGGCGTAtagtttgttaggataggacaatatttgttTGAGGTATTTGGAATTTGAGGATTTAACAAatcaaaatattgagaaaattgaCTTCACAGTTGTCTAatttcttagcaatgcatattactaatctaGGTTTTGTTATATTCACAGTGGAACATTCATCAGATGTCTTCATGTAATATGATAATTACTTGATTATCTAATGGTGTTTGACCTAATCAATCATTTTAAGCCATGCAATGTATTCTTGCCAATTTCTCGTGCAACATAaaatggttttgtggtccaggtaCTTTATATGGTGCCTCTGAATTGTGAGTTTGCAATTAAGTTTGCTGTATTCATAAATCACTTGATATCTCTATAATCTAAGGTCTGTAAGATTTTATAAATGAAGAatataaaattgcaaaaaaaaaaaatgctaatcgaAATTTTcagcatgatttagcatgattATTCCAGTGTGAAATAAAAATCCTATAGAACAGAGATCCCCAAAGGGCCAACGTTGGCCTAAGCATGAtaacttttgatttggcccaccgtcCCATCTGACAatagagggagaatgatggggtgAATATTTATGGCAGAGATTgtcattttgaatttaatgtaaatttctgtttatttagtaatttatttggctctaattttggaaaaaaaaaaaatgtaaatattgtcccGTGATGGATAAAGAACAATGGGGCCtgcagtttagtttattcagcattg
>TCONS_00026544
CACCAATACAAACACAGATTTATGTCATTCAGAAAGAGATTTTGAAATCATGAAAGGATTGCCAGTGCTCATACCTGTAGGTGCAGTTGTTTCAGTCTTTCTGTGATTTGTTGATGACAGCTTTATCTTGAGTATAACCTACTAAGTTTTCTGAGATTACTAGACTTAAACATGGTCTAGTGAGCAGCAGCACTCATGATCTAATAATTCTGTCACGAGATATTTGTGTACATGTGGGATTAGACtagctgaagttttttttccaCGTATTTCAGCAGCTCATTGAAGACTATTGGAGATGGCGTCTGAGAAAAAGGACACCGGTGAAGTTTTGAAGGATCAGAATGTATTTTTTCGAATCCTCAATATTCGGTCTGTCAATGCTGCTCTGGAATCTATTGAGAAGACGTACACTAGTACGAAGCAGTCTCACCCCATTATAAGCTCTGTTTGTGGCCTGTATGAGAAGGGTGTGAGTAGGGCTGGAAATCTGGCTGTGTGGAGCATGAAACCTGCCCTCCATGTGCTACAACCCCAGCTTGTAGCAGCAAACTCAATGGCCTGCAAAGGACTGGACCGACTGGAAGAGAAGGTACCAGCATTGCAATCTCCACCTGCAGAGCTGGCAGCAAAcataaaggggctaatgtctTCAACCCTGGAAGCCGCCAAGGATGGGATCACCTGTCCAATCAAACACAGCTCTAATGTTGTTCTGGACAAGGTTTCTTCAAGGTACCAGCAGAGTAAGAACACTCTCAGTGGCGGCATACAGTACATCCTGAACAGCAAGCTTGTCTTCTTGGCTGAACAGAGAGCCAGCAGGGCTCTAAGTCTAACAGAAAACCTGATCGACTGCATCCTTCCTGGAACTTCAGACAAGACAGAGAATGATAGGAGTACAGAAGAGCAACAGGAGTCTTATGTTGGAGCTTCTGACCCTATGCCGATCTTCAGCAGGCTTGGAGCTCTGGCAAGCACCATCTGCAGACGTGCCTTTGAAAAGACATTTGCACAGCTCCAGCTATCCACACACCAGGGTCACACACTGGTCAAGCGGATCCCTGGCCTGAATCCTCTGGTTGAATTTACCATGAGTACTATGAGGACCATGGGAGGTATAATAAAAGGATTCCCAAGCTCAATGGCAACGTATTTGAAAGATGGCCAACAGCACAGTCCTCTAAAGGAGATGGCCAATGATGAGCATGGGCAAGTCAAGAGTAATGGGCTGGTCAGTGGATTAGGGCAGCGGTTATTGAAAGTCTATGGATCTGTGGTGGCTAATATAAAGAAAACCTCTCGAACCAGCTTCAATCTGGCTAAAGATGGAGTGAACATTGTCCTGGGCTCCTTCGGCACAGTCAGAGAGAAAACACTCCACAAGCTTTCTTATTATGGGCTGGTGAGTGAGTCAGTCATTTGATTTAGGCCCTCACGTGCTTTGATGCATCTGGAATCTAATGCACGTGGACTCTTCACATGTGAATGCATACagacacaaccacacacacacttacacctcAGCCTCATCACCACTCCTGCTATGATGACACACTTCAGCAGGAGATTTCCTTCATAGGTTCTGTCTAGACTAGAGAGCATCATTTGATTCTTTTAATAAATGGTGACCGTTCTTCACAACGCTTTAAGATcactttaatattgaaacaattaagAAAAGGGTTAATTTACACATCAAAATGCACTTGAATACatgacaaaacattttaaaatgtg
>TCONS_00026545
AATGTATTTTTTCGAATCCTCAATATTCGGTCTGTCAATGCTGCTCTGGAATCTATTGAGAAGACGTACACTAGTACGAAGCAGTCTCACCCCATTATAAGCTCTGTTTGTGGCCTGTATGAGAAGGGTGTGAGTAGGGCTGGAAATCTGGCTGTGTGGAGCATGAAACCTGCCCTCCATGTGCTACAACCCCAGCTTGTAGCAGCAAACTCAATGGCCTGCAAAGGACTGGACCGACTGGAAGAGAAGGTACCAGCATTGCAATCTCCACCTGCAGAGCTGGCAGCAAAcataaaggggctaatgtctTCAACCCTGGAAGCCGCCAAGGATGGGATCACCTGTCCAATCAAACACAGCTCTAATGTTGTTCTGGACAAGGTTTCTTCAAGGTACCAGCAGAGTAAGAACACTCTCAGTGGCGGCATACAGTACATCCTGAACAGCAAGCTTGTCTTCTTGGCTGAACAGAGAGCCAGCAGGGCTCTAAGTCTAACAGAAAACCTGATCGACTGCATCCTTCCTGGAACTTCAGACAAGACAGAGAATGATAGGAGTACAGAAGAGCAACAGGAGTCTTATGTTGGAGCTTCTGACCCTATGCCGATCTTCAGCAGGCTTGGAGCTCTGGCAAGCACCATCTGCAGACGTGCCTTTGAAAAGACATTTGCACAGCTCCAGCTATCCACACACCAGGGTCACACACTGGTCAAGCGGATCCCTGGCCTGAATCCTCTG

Function

symbol description
plin1 Predicted to be involved in lipid storage and positive regulation of sequestering of triglyceride. Predicted to be active in cytosol and lipid droplet. Human ortholog(s) of this gene implicated in familial partial lipodystrophy type 4 and obesity. Orthologous to human PLIN1 (perilipin 1).

GO:

id name namespace
GO:0010890 positive regulation of sequestering of triglyceride biological_process
GO:0019915 lipid storage biological_process
GO:0005811 lipid droplet cellular_component
GO:0005829 cytosol cellular_component

KEGG:

id description
ko04371 Apelin signaling pathway
ko04923 Regulation of lipolysis in adipocytes
ko03320 PPAR signaling pathway
ko04714 Thermogenesis

ZFIN:

id description
ZDB-GENE-050419-213 Predicted to be involved in lipid storage and positive regulation of sequestering of triglyceride. Predicted to be active in cytosol and lipid droplet. Human ortholog(s) of this gene implicated in familial partial lipodystrophy type 4 and obesity. Orthologous to human PLIN1 (perilipin 1).

Ensembl:

ensembl_id ENSDARG00000054048

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026543 False 2450 mRNA 0.41 8 25229634 25279323
TCONS_00026544 False 1740 mRNA 0.44 7 25245541 25276932
TCONS_00026545 True 738 mRNA 0.49 4 25255677 25276262

Neighbor

gene id symbol gene type direction distance location
XLOC_013445 NA coding downstream 4198 25180539 ~ 25225436 (-)
XLOC_013443 slco3a1 coding downstream 52404 25073984 ~ 25177230 (-)
XLOC_013444 BX901968.2 coding downstream 70857 25158661 ~ 25158777 (-)
XLOC_013442 st8sia2 coding downstream 177788 25027495 ~ 25051846 (-)
XLOC_013441 NA coding downstream 232564 24990268 ~ 24997070 (-)
XLOC_013447 gnrhr4 coding upstream 111848 25391171 ~ 25402715 (-)
XLOC_013448 CR450716.1 coding upstream 236570 25515893 ~ 25516631 (-)
XLOC_013449 si:ch211-13k12.2 coding upstream 283969 25563292 ~ 25646286 (-)
XLOC_013450 NA coding upstream 417952 25697275 ~ 25745621 (-)
XLOC_013451 zgc:162879 coding upstream 475515 25754838 ~ 25771553 (-)
XLOC_013384 BX323829.1 misc downstream 5687403 19542102 ~ 19542231 (-)
XLOC_013438 NA non-coding downstream 470194 24736359 ~ 24759440 (-)
XLOC_013439 AL935295.2 non-coding downstream 483233 24741499 ~ 24746401 (-)
XLOC_013455 dre-mir-184-1 non-coding upstream 923980 26203303 ~ 26203389 (-)
XLOC_013456 CR352253.1 non-coding upstream 1016842 26296165 ~ 26299843 (-)
XLOC_013467 NA non-coding upstream 1775523 27054846 ~ 27066350 (-)

Expression


Co-expression Network