XLOC_013449 (si:ch211-13k12.2)


Basic Information

Item Value
gene id XLOC_013449
gene name si:ch211-13k12.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25563292 ~ 25646286 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026549
CCCACAAACACCCCAGAACTGAACCGGAAATCTGCACGGACCAGCAGCTCGCAAACGGCCAGCACAAAAAGAAGAAGTCCAAGAAGCATAAAGAAAAGGAGAGGGAACGTTTAAAACCCGAGTGGGTCGAGACCAGTCCTGACCTCAAACACAACCAGGAGAATATTAATGaTCACGAACGGCCCAACACACCTGTCACCCGCGCCTCGCCTGATCAGCTGCCCGACTATTTATTAAaatacaacactattacagactcTGAGCAGCGGCAAAGATACAAAGAGGATTTCTGTGCAGAGTACGATGAGTACAGAGACCTTCATGAGCGCATTGGGAAAGTCACAGAGATATTTGTCCAGCTCGGATCCAAGATAAAAACACTGTCACCTGGCACACAGGAGTACAAGGTTATGGAAGATCAAATAATGGAGAAGTATAAGAAGTATAAGAAGAAGTTTCCAGGCTACCGGGAAGAGAAGAAGCGTTGTGAATATCTTCATCAGAAACTGTCGCACATCAAAGGCCTGATTCTGGACTATGACCAAACACAATTGCCATCCTAG
>TCONS_00026551
CCcaaccaatgccaagaagcctatattaatcatatagctcttctattatttttttttattatgttgtaAAATATGTCTATAGCCATTAAGATTTTGCCTGTATTACTAATTTTTACTAAAACCTGGGGCCTCCATGAATAGTAGAACATTTAGCTATTTCatactgcacatgcaaatattaaaatctaatcacgAATATGGCTAATTAACTGTACATATAGTTAGTTTGTGAAGTTGTTAATTGTacttaattttacattaattttattttttttaaaaaacaacaacaaaaaacgaatctacagaggaaaaaaaatatctgtatataGAAAGAGAGTTTTAATGTTAGGGCTTCATACATGGAAtagcttagggcccccaaattaCTAAGTCCGCCCCTGTAAATACAGGGGTGATATCACCATAATATAAAAAAGCGGAGATGTTAGTTCAGTAGGTTTATTAGTGAAATGCACATGTACATtgagtgtgtgcgcgcgtgtttgtgtgtgtgtctatgacgTCGCCACAACGCTGTCTCGTAGCCCCGCCCGGCAGAGAGTGACGTTTGGACGAGAATGTCGCCAGTTCACCTCAGTTCCAGACATGGCAGCGTTGAGACAGGAGCATCGGTATGGACTCTCCTGTGGAAAGATTAATAAAAGCATTCCCAACAAAACCATCTTTCACGTCAAACTAACCGACACGGCCATCCGGACGCTGGAAGCCTATCAGAATCTTAAGTATATCAAGATTCCAGCGTCCTCTGATTCTCCTGATGCTTTCCGTGTGTTCTCCTTCTACCTGTCCAGCGACAGTAAAGACAAACCTCAGGCCAGCTTTGATTGTGTTCACCAGTTTGTTTCGGGAGATGGCAGGGATCGTCTGGAAGGTCAGGGCAGTATTCAGGATAAAATCACAGTGTGTGCCACCGACGATTCCTACCAGATGACCCGCGAGCGCATGTCTCAAGTGGAAAAGGACATCTGGAGTCGCTCAGCCATCGAAATCAAACCTGGATCTACACGTCCAAGTAAATGTGTGAAGATTAAGAAGAAACAGAGTCTTTCAGCAagttttgacagcactaataaacaTTCACCGAGCAACAAGAGGAACGGTGGTCCCAGCCTGGTGACTCACAGGCCCTTGAGGGAGAGAGTTATTCACATATTGGCCTTAAAGCCTTACAGCAAACCTGAACTATTGCTCTGGCTGGAGAGGGAGAAAGCAAGCCCCAAGGACAAGGCCGACTTGAGCCCTGTGCTGGATGAGGTGGCGAAACTCAATCCCAAAGAACACAGCTTTACTCTGAAGGATGATTTCTACAGACATGTGCGGAAAGACTGGCCAGGCTATGTAGAGGAAGAGCGGCAACTCATTCAGAGGGTGTTAGCAAGAAAGCTCCAGCcgctcagcagcagcagcagcagtagccAGTTGAAAAGCTTCCAGTCCAGCCATTCATTCCACAAAACCTCAGGGGATTCTCCATCCCAACTCAGCCCTGTCAAGACTCCCTCCATGAAACGCCCAGTGCCTTCCGACCATCCAGAAAGTCAGACGCCGAAAAAGCAACGTTTATTAGAGCAGAACATCCCCTTACAGTCTCCTTCCAATGGACATCTCAGCTCGTCTGTGGGCCGCAGCTCTTCCTCTCATGGAAACACAAGTTTGCAGAGAGGTCCGAACACAGATGAGTTTTACCAGAGGCACAAGCTCAACGAGGGCAACAGTTTGCCCAAAACTGAGCAGCCCGAACCAGCAGCGTCCAGCCCCCACAAACACCCCAGAACTGAACCGGAAATCTGCACGGACCAGCAGCTCGCAAACGGCCAGCACAAAAAGAAGAAGTCCAAGAAGCATAAAGAAAAGGAGAGGGAACGTTTAAAACCCGAGTGGGTCGAGACCAGTCCTGACCTCAAACACAACCAGGAGAATATTAATGaTCACGAACGGCCCAACACACCTGTCACCCGCGCCTCGCCTGATCAGCTGCCCGACTATTTATTAAaatacaacactattacagactcTGAGCAGCGGCAAAGATACAAAGAGGATTTCTGTGCAGAGTACGATGAGTACAGAGACCTTCATGAGCGCATTGGGAAAGTCACAGAGATATTTGTCCAGCTCGGATCCAAGATAAAAACACTGTCACCTGGCACACAGGAGTACAAGGTTATGGAAGATCAAATAATGGAGAAGTATAAGAAGTATAAGAAGAAGTTTCCAGGCTACCGGGAAGAGAAGAAGCGTTGTGAATATCTTCATCAGAAACTGTCGCACATCAAAGGCCTGATTCTGGACTATGACCAAACACAATTGCCATCCTAG
>TCONS_00026550
CCcaaccaatgccaagaagcctatattaatcatatagctcttctattatttttttttattatgttgtaAAATATGTCTATAGCCATTAAGATTTTGCCTGTATTACTAATTTTTACTAAAACCTGGGGCCTCCATGAATAGTAGAACATTTAGCTATTTCatactgcacatgcaaatattaaaatctaatcacgAATATGGCTAATTAACTGTACATATAGTTAGTTTGTGAAGTTGTTAATTGTacttaattttacattaattttattttttttaaaaaacaacaacaaaaaacgaatctacagaggaaaaaaaatatctgtatataGAAAGAGAGTTTTAATGTTAGGGCTTCATACATGGAAtagcttagggcccccaaattaCTAAGTCCGCCCCTGTAAATACAGGGGTGATATCACCATAATATAAAAAAGCGGAGATGTTAGTTCAGTAGGTTTATTAGTGAAATGCACATGTACATtgagtgtgtgcgcgcgtgtttgtgtgtgtgtctatgacgTCGCCACAACGCTGTCTCGTAGCCCCGCCCGGCAGAGAGTGACGTTTGGACGAGAATGTCGCCAGTTCACCTCAGTTCCAGACATGGCAGCGTTGAGACAGGAGCATCGGTATGGACTCTCCTGTGGAAAGATTAATAAAAGCATTCCCAACAAAACCATCTTTCACGTCAAACTAACCGACACGGCCATCCGGACGCTGGAAGCCTATCAGAATCTTAAGGGGTCCTTACCAAATCAGCCGGCAATTTGCTTCAAGGGGAACCAGGGGTATATCAAGATTCCAGCGTCCTCTGATTCTCCTGATGCTTTCCGTGTGTTCTCCTTCTACCTGTCCAGCGACAGTAAAGACAAACCTCAGGCCAGCTTTGATTGTGTTCACCAGTTTGTTTCGGGAGATGGCAGGGATCGTCTGGAAGGTCAGGGCAGTATTCAGGATAAAATCACAGTGTGTGCCACCGACGATTCCTACCAGATGACCCGCGAGCGCATGTCTCAAGTGGAAAAGGACATCTGGAGTCGCTCAGCCATCGAAATCAAACCTGGATCTACACGTCCAAGTAAATGTGTGAAGATTAAGAAGAAACAGAGTCTTTCAGCAagttttgacagcactaataaacaTTCACCGAGCAACAAGAGGAACGGTGGTCCCAGCCTGGTGACTCACAGGCCCTTGAGGGAGAGAGTTATTCACATATTGGCCTTAAAGCCTTACAGCAAACCTGAACTATTGCTCTGGCTGGAGAGGGAGAAAGCAAGCCCCAAGGACAAGGCCGACTTGAGCCCTGTGCTGGATGAGGTGGCGAAACTCAATCCCAAAGAACACAGCTTTACTCTGAAGGATGATTTCTACAGACATGTGCGGAAAGACTGGCCAGGCTATGTAGAGGAAGAGCGGCAACTCATTCAGAGGGTGTTAGCAAGAAAGCTCCAGCcgctcagcagcagcagcagcagtagccAGTTGAAAAGCTTCCAGTCCAGCCATTCATTCCACAAAACCTCAGGGGATTCTCCATCCCAACTCAGCCCTGTCAAGACTCCCTCCATGAAACGCCCAGTGCCTTCCGACCATCCAGAAAGTCAGACGCCGAAAAAGCAACGTTTATTAGAGCAGAACATCCCCTTACAGTCTCCTTCCAATGGACATCTCAGCTCGTCTGTGGGCCGCAGCTCTTCCTCTCATGGAAACACAAGTTTGCAGAGAGGTCCGAACACAGATGAGTTTTACCAGAGGCACAAGCTCAACGAGGGCAACAGTTTGCCCAAAACTGAGCAGCCCGAACCAGCAGCGTCCAGCCCCCACAAACACCCCAGAACTGAACCGGAAATCTGCACGGACCAGCAGCTCGCAAACGGCCAGCACAAAAAGAAGAAGTCCAAGAAGCATAAAGAAAAGGAGAGGGAACGTTTAAAACCCGAGTGGGTCGAGACCAGTCCTGACCTCAAACACAACCAGGAGAATATTAATGaTCACGAACGGCCCAACACACCTGTCACCCGCGCCTCGCCTGATCAGCTGCCCGACTATTTATTAAaatacaacactattacagactcTGAGCAGCGGCAAAGATACAAAGAGGATTTCTGTGCAGAGTACGATGAGTACAGAGACCTTCATGAGCGCATTGGGAAAGTCACAGAGATATTTGTCCAGCTCGGATCCAAGATAAAAACACTGTCACCTGGCACACAGGAGTACAAGGTTATGGAAGATCAAATAATGGAGAAGTATAAGAAGTATAAGAAGAAGTTTCCAGGCTACCGGGAAGAGAAGAAGCGTTGTGAATATCTTCATCAGAAACTGTCGCACATCAAAGGCCTGATTCTGGACTATGACCAAACACAATTGCCATCCTAG
>TCONS_00026552
ATGGCAGCGTTGAGACAGGAGCATCGGTATGGACTCTCCTGTGGAAAGATTAATAAAAGCATTCCCAACAAAACCATCTTTCACGTCAAACTAACCGACACGGCCATCCGGACGCTGGAAGCCTATCAGAATCTTAAGGGGTCCTTACCAAATCAGCCGGCAATTTGCTTCAAGGGGAACCAGGGGTATATCAAGATTCCAGCGTCCTCTGATTCTCCTGATGCTTTCCGTGTGTTCTCCTTCTACCTGTCCAGCGACAGTAAAGACAAACCTCAGGCCAGCTTTGATTGTGTTCACCAGTTTGTTTCGGGAGATGGCAGGGATCGTCTGGAAGGTCAGGGCAGTATTCAGGATAAAATCACAGTGTGTGCCACCGACGATTCCTACCAGATGACCCGCGAGCGCATGTCTCAAGTGGAAAAGGACATCTGGAGTCGCTCAGCCATCGAAATCAAACCTGGATCTACACGTCCAAGTAAATGTGTGAAGATTAAGAAGAAACAGAGTCTTTCAGCAagttttgacagcactaataaacaTTCACCGAGCAACAAGAGGAACGGTGGTCCCAGCCTGGTGACTCACAGGCCCTTGAGGGAGAGAGTTATTCACATATTGGCCTTAAAGCCTTACAGCAAACCTGAACTATTGCTCTGGCTGGAGAGGGAGAAAGCAAGCCCCAAGGACAAGGCCGACTTGAGCCCTGTGCTGGATGAGGTGGCGAAACTCAATCCCAAAGAACACAGCTTTACTCTGAAGGATGATTTCTACAGACATGTGCGGAAAGACTGGCCAGGCTATGTAGAGGAAGAGCGGCAACTCATTCAGAGGGTGTTAGCAAGAAAGCTCCAGCcgctcagcagcagcagcagcagtagccAGTTGAAAAGCTTCCAGTCCAGCCATTCATTCCACAAAACCTC
>TCONS_00026553
GGAGCATCGGTATGGACTCTCCTGTGGAAAGATTAATAAAAGCATTCCCAACAAAACCATCTTTCACGTCAAACTAACCGACACGGCCATCCGGACGCTGGAAGCCTATCAGAATCTTAAGGGGTCCTTACCAAATCAGCCGGCAATTTGCTTCAAGGGGAACCAGGGGTATATCAAGATTCCAGCGTCCTCTGATTCTCCTGATGCTTTCCGTGTGTTCTCCTTCTACCTGTCCAGCGACAGTAAAGACAAACCTCAGGCCAGCTTTGATTGTGTTCACCAGTTTGTTTCGGGAGATGGCAGGGATCGTCTGGAAGGTCAGGGCAGTATTCAGGATAAAATCACAGTGTGTGCCACCGACGATTCCTACCAGATGACCCGCGAGCGCATGTCTCAAGTGGAAAAGGACATCTGGAGTCGCTCAGCCATCGAAATCAAACCTGGATCTACACGTCCAAGTAAGAATCCAGCTCATGTGCACACAAAGAACCACTCCATATGCACAGACACAATTATCTCTCATTAAACATATCAAATAACACTTTTCCCCCAAATAATACCCATGTAATATCATGTCCAAATGATACTCAAGTGAAAGCACAGATAgttgagtaaaagtaaaaaaaaaatgcagttttaataattctctaataataataattaatatgcaaaatattaaaaaaaagttttttttagatgacATTTAgtgctatttttgaaaaaaaaaaaa

Function

symbol description
si:ch211-13k12.2 Predicted to act upstream of or within transcription elongation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000038121

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026549 False 563 mRNA 0.46 5 25563292 25568994
TCONS_00026551 False 2340 mRNA 0.45 11 25563292 25646286
TCONS_00026550 False 2388 mRNA 0.46 12 25563292 25646286
TCONS_00026552 False 923 mRNA 0.49 7 25572222 25645680
TCONS_00026553 True 730 lncRNA 0.41 4 25596239 25645663

Neighbor

gene id symbol gene type direction distance location
XLOC_013448 CR450716.1 coding downstream 46661 25515893 ~ 25516631 (-)
XLOC_013447 gnrhr4 coding downstream 160577 25391171 ~ 25402715 (-)
XLOC_013446 plin1 coding downstream 283969 25229634 ~ 25279323 (-)
XLOC_013445 NA coding downstream 337856 25180539 ~ 25225436 (-)
XLOC_013443 slco3a1 coding downstream 386062 25073984 ~ 25177230 (-)
XLOC_013450 NA coding upstream 50989 25697275 ~ 25745621 (-)
XLOC_013451 zgc:162879 coding upstream 108552 25754838 ~ 25771553 (-)
XLOC_013452 sema4ba coding upstream 137160 25783446 ~ 25905623 (-)
XLOC_013453 idh2 coding upstream 450528 26096814 ~ 26101800 (-)
XLOC_013454 CABZ01039782.1 coding upstream 478377 26124663 ~ 26126258 (-)
XLOC_013384 BX323829.1 misc downstream 6021061 19542102 ~ 19542231 (-)
XLOC_013444 BX901968.2 non-coding downstream 404515 25158661 ~ 25158777 (-)
XLOC_013441 NA non-coding downstream 566222 24990268 ~ 24997070 (-)
XLOC_013438 NA non-coding downstream 803852 24736359 ~ 24759440 (-)
XLOC_013455 dre-mir-184-1 non-coding upstream 557017 26203303 ~ 26203389 (-)
XLOC_013456 CR352253.1 non-coding upstream 649879 26296165 ~ 26299843 (-)
XLOC_013467 NA non-coding upstream 1408560 27054846 ~ 27066350 (-)
XLOC_013468 CR936464.1 non-coding upstream 1490579 27136865 ~ 27136982 (-)

Expression


Co-expression Network