XLOC_013451 (zgc:162879)


Basic Information

Item Value
gene id XLOC_013451
gene name zgc:162879
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25754838 ~ 25771553 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026554
TAAACTAAAGGTGtttaaaactgaaaaacaaatgCAGCTCGAGTTTTTACATGACCTAAATGTGTGCACTTTTCGCACAGGAGTCAACAGATGAAGACATCCCAATGTGTATAATAGGGAACAAGGTGGATCTGAGGGCAGCGAGGCCAGAGGGAAGCTGTGTGAGCTCTATCCATGGAGAAAAGCTTGCAATGAATTATAATGCCCTGTTCTGCGAGGCAAGTGCTAAAGAGGGGACAAACGTCATTGAGGCAGTTTTACATTTAGCAAGAGAAGTAAAGAAACATGTTAAACTGGGCCGGAGGTCAGAGTCACAGGTCAAGCTGAGTCTTCACAAACGGAGGAAGACCCTGAGCAACTGCTGTGGAGTTTAAGTCTTGTTTGTTTACTTGTCTTTTATTTTAGTGTCAGTGCTTAGTTAAGCTaacaatttattataattttttttaaaataagtattgcacttTGTGAAATCAAGTcctttttattagaaaaaaaaagtttataatatattatttgttttattaattgtaaatTTTAAGCCATTTTATACAGCTTTGGATGTttcatttgcattttgtttttgtttttttaaaagcacactGATCAAATGTATACTTGTGCATTTGCCTACAAATGATCAAATCACTTCAGGgttcagtgtttgttttttgtttttgttttattatttatatgttgtaGTTATTGTGAcagatttacaaataaaacttttacatttaaatcCAAA
>TCONS_00026555
GTCGGATTTTAGCTTCAGCTTTCGGCGCACCTGTTGGTGATGTACATGTCGGACCACGATAGCTTCGCGTTCATTTCTCTTCACGCTTTCGTCTTTTCATCTTTTCGTTTTATCACTTCAGCCTGTTCTATCTGGAGTGGTATCTTTATAACACGGGTgtgaataactttttttttcaatcttttgTCCTCGTCGAGTGGAAAGATGAACCACGCTGAGCTCAGAAGACTCTTCGCAGCATGTGATGGGAATCAGTCAGGAAGAGTCGAGTATGAGGACTTCACTACTGTTTGCCGAGAGCTTAATGTCCCCGCGGACGACATCAGGACTTTATTCAACAAGTTTGACCTGGACGGAGACGGATATATCAATTTTAACGACTTTTCGTCAAGCTTTCAGGAAGTTTCGGAAGCCCTCAATCTGGCTTCGTTGGGAAACTGTTTGCATAGTCAGAGAAGAGCTTGGGATGAGTTTGAAAACACGCTGGACGGAGATGTGGCCTTTTATTTGGGAAGACAGTGGGATGCACTAAGTGAGTTGTATGAAGGGATCCACTCTACATCAGATGAGCTGTTACTGCAGCAGTTTGAGGATCTCATCAGGGCTCTTGTGACTGAGATCAGAGAGCACAGAATGGAGAGTGAACAGCTTGAGACCAGTCTGCGGAGGACAGAGGAAGTGTCTAGCAGTCAGCTAGCAGAGATGGAGGAGGACTTGCAGCAGCAGCTGATCCACACAGAACGAAGGGTCCGAGAAGAGGAGCAGAAGAAGTTGGATGAATCCATTGCTATGCTTCAAATAAAACATGAGAATGAGTTGGCAGACCTGCAAACCACTATAGAAAGGCTCACAAAGCAATATCAAGAGGAGTCAAAGTTAAACACCCCCAGGGAAGATTCAGTCAAATTAAGAGCCCAGATTAAAGATCTGATGGAGGAGAATGAGGAGCTGAGGGCTTCTCTCATGAAAGCCCAGATGAACGTCTCCATTCTTCAGGTTGAGTTGGATAAGTTAAAGAATGCCTTCACTGATCAGAAACGCCAACACGAGAGAGAAAGTGATGACCTCAAGAAGATGGTGATGGAGTTCCAGTCTTATTCCAGCCATATAGAAATGCTCCAGGAAATGAACAAATCTTTGTATGACAGCAATGATGGGTTACGCTCCGCTCTGAGCCAGGAGAACGCCTCCACCAAAAGACagCTCTCCCCAAGAAATGAAGTTCTTCCCAGGAAGATGAAACCGATTCGACAGAGTACAATGAATCAGAGCAGTTTTACTAATGAAGAGGACACTCTGGCCCTGGTGAAGTGCTGGGCTGAAAAGTATTTGGACAGCGGTGTTTCCGTTCAGTCAGAAATGGATGCAATGTCAGGTATTGATTATGACAGTGACGACAGCCATCATTCAGTGGAGACAGTGCATCACAGCTATTCCTGTGTCCCTTCTGAACTGGAGGTGTCAGAAGTGAAGCCTGAAGCTTTGAGATCTGTAGCTCGTAGCACAGTTGGCTCCATATCATCCTCACTTCGGCGGCGTTTGTCTGCTTTTCCTGTCAAGCAAAATGAGGAAGATTTACTTGACACACAAGATCTGGCTCCAGTGTACCGTTTGGTGTTGGCTGGAGATGCCGGGTCAGGAAAATCCAGCTTTTTACTGAGGTTGAGTCTTAATGAATTCAGAGGGGATATACAAACCACTCTTGGTGTTGATTTTCAAATTAAGAAGATGCTTGTAGATGGAGAGAAAACAAACCTTCAGATCTGGGACACTGCTGGACAGGAAAGATTCCGCAGCATTGCCAGGTCATATTTCCGCAAAGCACATGGAGTGTTACTACTGTATGATGTCACATCTGAAAGCAGTTTCCTGAATGTCCGTGAATGGGTGGAACAGATCCGGGAGTCAACAGATGAAGACATCCCAATGTGTATAATAGGGAACAAGGTGGATCTGAGGGCAGCGAGGCCAGAGGGAAGCTGTGTGAGCTCTATCCATGGAGAAAAGCTTGCAATGAATTATAATGCCCTGTTCTGCGAGGCAAGTGCTAAAGAGGGGACAAACGTCATTGAGGCAGTTTTACATTTAGCAAGAGAAGTAAAGAAACATGTTAAACTGGGCCGGAGGTCAGAGTCACAGGTCAAGCTGAGTCTTCACAAACGGAGGAAGACCCTGAGCAACTGCTGTGGAGTTTAAGTCTTGTTTGTTTACTTGTCTTTTATTTTAGTGTCAGTGCTTAGTTAAGCTaacaatttattataattttttttaaaataagtattgcacttTGTGAAATCAAGTcctttttattagaaaaaaaaagtttataatatattatttgttttattaattgtaaatTTTAAGCCATTTTATACAGCTTTGGATGTttcatttgcattttgtttttgtttttttaaaagcacactGATCAAATGTATACTTGTGCATTTGCCTACAAATGATCAAATCACTTCAGGgttcagtgtttgttttttgtttttgttttattatttatatgttgtaGTTATTGTGAcagatttacaaataaaacttttacatttaaatcCAAA
>TCONS_00026556
AGAAATGAAGTTCTTCCCAGGAAGATGAAACCGATTCGACAGAGTACAATGAATCAGAGCAGTTTTACTAATGAAGAGGACACTCTGGCCCTGGTGAAGTGCTGGGCTGAAAAGTATTTGGACAGCGGTGTTTCCGTTCAGTCAGAAATGGATGCAATGTCAGGTATTGATTATGACAGTGACGACAGCCATCATTCAGTGGAGACAGTGCATCACAGCTATTCCTGTGTCCCTTCTGAACTGGAGGTGTCAGAAGTGAAGCCTGAAGCTTTGAGATCTGTAGCTCGTAGCACAGTTGGCTCCATATCATCCTCACTTCGGCGGCGTTTGTCTGCTTTTCCTGTCAAGCAAAATGAGGAAGATTTACTTGACACACAAGATCTGGCTCCAGTGTACCGTTTGGTGTTGGCTGGAGATGCCGGGTCAGGAAAATCCAGCTTTTTACTGAGGTTGAGTCTTAATGAATTCAGAGGGGATATACAAACCACTCTTGGTGAGAAGATGCAAcaatgccatttttttttcttaagtgtGTTAATGTTACCATATGAATACAGTGTGATAATGGAGAATCTTGCAGGTGTTGATTTTCAA

Function

symbol description
zgc:162879 Predicted to enable GTP binding activity; GTPase activity; and calcium ion binding activity. Predicted to be located in perinuclear region of cytoplasm.

GO:

id name namespace
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-92 Predicted to enable GTP binding activity; GTPase activity; and calcium ion binding activity. Predicted to be located in perinuclear region of cytoplasm.

Ensembl:

ensembl_id ENSDARG00000074163

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026554 False 748 processed_transcript 0.34 3 25754838 25758277
TCONS_00026555 False 2570 mRNA 0.43 17 25754838 25771553
TCONS_00026556 True 594 lncRNA 0.44 4 25760060 25762338

Neighbor

gene id symbol gene type direction distance location
XLOC_013450 NA coding downstream 9217 25697275 ~ 25745621 (-)
XLOC_013449 si:ch211-13k12.2 coding downstream 108552 25563292 ~ 25646286 (-)
XLOC_013448 CR450716.1 coding downstream 238207 25515893 ~ 25516631 (-)
XLOC_013447 gnrhr4 coding downstream 352123 25391171 ~ 25402715 (-)
XLOC_013446 plin1 coding downstream 475515 25229634 ~ 25279323 (-)
XLOC_013452 sema4ba coding upstream 11893 25783446 ~ 25905623 (-)
XLOC_013453 idh2 coding upstream 325261 26096814 ~ 26101800 (-)
XLOC_013454 CABZ01039782.1 coding upstream 353110 26124663 ~ 26126258 (-)
XLOC_013455 dre-mir-184-1 coding upstream 431750 26203303 ~ 26203389 (-)
XLOC_013456 CR352253.1 coding upstream 524612 26296165 ~ 26299843 (-)
XLOC_013384 BX323829.1 misc downstream 6212607 19542102 ~ 19542231 (-)
XLOC_013445 NA non-coding downstream 529402 25180539 ~ 25225436 (-)
XLOC_013444 BX901968.2 non-coding downstream 596061 25158661 ~ 25158777 (-)
XLOC_013441 NA non-coding downstream 757768 24990268 ~ 24997070 (-)
XLOC_013467 NA non-coding upstream 1283293 27054846 ~ 27066350 (-)
XLOC_013468 CR936464.1 non-coding upstream 1365312 27136865 ~ 27136982 (-)
XLOC_013469 BX640463.3 non-coding upstream 1535371 27306924 ~ 27307040 (-)

Expression


Co-expression Network