XLOC_013452 (sema4ba)


Basic Information

Item Value
gene id XLOC_013452
gene name sema4ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25783446 ~ 25905623 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026557
ATGTGGACACTAAACATGACACGTGTCTTTTTCCTGTTCCTCCTCAACGTCCTCCTGGTCGGACGGTGTCAATCAGCAGAAGACGACGTCACCCCTCGCCTCAGCTTCTCTTACAATGCAAACGAGAGGTCGGCCAAGAGATTTTCACCCAGTGGAGTCTTCAATTACACCTCTCTGCTCCTCAGTAAAGAGGATAACATGCTGTACGTCGGCGCTCGAGAGACTCTCTTCGCACTTAATATCAGCGATATCAGCAGAACGCAGATGCAGCGCAACTTAACGTGGAGCACGCCGCAGAGAAAAAGAGATGAATGCAGTTTCAAAGGGAAGGACTTAAAGACGGACTGCTTCAATTACATCAAGATTTTACTGCGTGTGAACAGCACTCATCTGTACGTGTGTGGAACGTATGCCTTCAGTCCAATCTGCACATACATCGTAAGTACTAACACATCAAACTTTTCCCTGGTGCGCAATGAAGTGGGAGAAATAATGACTGAAGATGGTCGAAGCCGATGCCCCTATAACCCTGAATACAAGTCCACGGCCATCATGGCTGatgGAGAACTGTATGCTGGCACTGTCAGTAATTTCCAAGGAAACGATCCCATCATTTACAAAAGTCTTGGCCAGGGCACAGCACTAAAGACTGAAAACTCACTGAACTGGCTTCAAGaCCCCGCTTTTGTGGGCTCAGCCTACATTCAGGAGAGTTTGCCCAAAGGCAATGCAGTGGGCGATGATGATAAGATTTACTTCTTCTTCAGTGAAGCAGGAAAGGAGTTCGATTTCTTTGACAACACTATTGTGTCACGCATCGCTCGCGTGTGTAAGGGTGATAAAGGTGGAGAGAGGGTTCTTCAGAAGAAATGGACGACCTTTCTGAAAGCCCAACTCCTGTGTTCACTGCCTGACGATGGCTTCCCCTTCAACATCATCCAAGACATGTTTGTACTGACGCCCAGCAAAGAAGACTGGAAGAAAACCATGTTTTATGGAGTCTTCACCTCACAGTGGTACAAAGGTGCTTCAGGGAGCTCAGCTGTATGTGCTTTCACTATGGACCAAGTTGAAGAGGCGTTTAATGGACGTTACCGGGAAGTTAATCGCGAGACGCAGCAGTGGTACACCTACAACCATCCAGTGCCAGAACCCAGACCTGGAGCCTGCATCACTAACACGGCCCGCGCCCAGGGGATCTCCTCTTCCCTGCACATGCCTGATAGAGTCCTGAACTTTGTGAAAGACCACTTCCTCATGGATAATGTGATTCGCAGTCAGCCTCTGCTGTTGAAACGAAATGTGCGCTACACGCAGCTCGCTGTGCACAGAGTACAGGCTCTCCACAAGACCTATGATGTGCTTTTCATTGGCACAGATGACGGCAGAATCCACAAAGCCATCAACGTTAAAAACAAGATGTATATCATTGAAGAGCTGGTGATTTTTCCTGAGCCTCAATCCGTGCAGCACATCGAACTGGATGATGAGAAGGGACTGTTGTTTGTGTCCAGCTATTCTGGGCTGGTGGAAATCCCTCTTGCCAACTGCTCTAACTACCAGAGCTGTGGAGAGTGTGTGCTGTCTAGAGACCCATACTGCGCCTGGACAGGGAAGCAGTGTTCTAATGTCAAGCATGCGTCCTCTAAGAGTCAATGGCAACAAGATGTAGAAGATGCCAACACTGCCATTTGCAAAATGCCCAGTCCCCGTTCAGGAAGACCACGTGTTCCAGCATGCCATGTGGTAGAAATCCCAGCAAACACATTTACAGTTCTACCCTGCAAACTGCGATCCAATTTAGCTGCAAGACGATGGGAGTACAGTGATACCGCAGAGCGTTTTGTCTACCCAAGTCCTGATGGCGGCCTGGTGGTTGTAGCCCAAGTGGACAGGCAGGAAAACTACGCGTGTTGGTCCGAAGAAGGCAACTATCGGCAACTTCTGGCCAGTTACTGTGTTAAAGCGGAGCACGAAAGCACCACCCTGACTGGACGTTCCCGAACACAGCAGGTGACCCAAGGAGAGACTATTCTACCTGGCGAAACGTGGTCACCACAAAAAACCAAAACATACTGGAATGAGCTGATTGTTGTGTGTGCCTTACTCGTGTTCTCCCTAGTAGTACTGTCGCTTTTTGTGGCGTACAGGAATCGAGATAGGATGAAGTCCATGTTAAAGGAAGGCGAGTGTCCTAACATGCAACAGAAGAAGCCGCGAATTCCAGGGAAGCACACTGAAAGCCTTCCGTTAAATGGCAACAACATCCCGCCCTCAGTGTCCGACCACAAGGGCTACCAGACTCTTAATGACAACTACATCTGCAGCACTCCAACCCACGAATGTTCCTCTCCCGAAAACAGCAAGAGCTTCTCAGAGTCTGAAAAGAGACTGTTGACTGTTAACTTAAAGGAGAGCCATGTGGAGATCTCACCCACTTGCCCGCGGCCTCGGGTACGACTAGGCTCGGAGATTAAAGACTCCATTGTTTAA
>TCONS_00026558
CAGATACACACAGTCACAGCAGCACACAGAGCACGAGCGTGAGCTTCGTACTACCAACCTCACATTCAGACCAACATACAGCTGATACTGGCCGTCTCATAAGCTGGATCTATTGACAGAACTCTGATTTCCTTTGGGATTCCCTTCTGCTTTCCCCCCCATGAGGAACCAGCTGAAAATCTATCCTAAAAAGAATTGCTGAACACAACACATTGTGGGAGTCTCATGGAGACTGATTTGTGCTGTACCGCTGTCCTTGAGGACTCAATTCTTGGTAGAAATCCACCATTGTGAGGCCCTGTGAAGGTGACCCCAAATCCTCAACACACAGCCCTGCTTTTCAGGAGCTTGAGGAGTAGAAGAAAAagaaactgtaaaaaaaagatcTTCATGAGAGCCCGAAAATCTAGAGTCACAAAATGTGGACACTAAACATGACACGTGTCTTTTTCCTGTTCCTCCTCAACGTCCTCCTGGTCGGACGGTGTCAATCAGCAGAAGACGACGTCACCCCTCGCCTCAGCTTCTCTTACAATGCAAACGAGAGGTCGGCCAAGAGATTTTCACCCAGTGGAGTCTTCAATTACACCTCTCTGCTCCTCAGTAAAGAGGATAACATGCTGTACGTCGGCGCTCGAGAGACTCTCTTCGCACTTAATATCAGCGATATCAGCAGAACGCAGATGCAGCGCAACTTAACGTGGAGCACGCCGCAGAGAAAAAGAGATGAATGCAGTTTCAAAGGGAAGGACTTAAAGACGGACTGCTTCAATTACATCAAGATTTTACTGCGTGTGAACAGCACTCATCTGTACGTGTGTGGAACGTATGCCTTCAGTCCAATCTGCACATACATCGTAAGTACTAACACATCAAACTTTTCCCTGGTGCGCAATGAAGTGGGAGAAATAATGACTGAAGATGGTCGAAGCCGATGCCCCTATAACCCTGAATACAAGTCCACGGCCATCATGGCTGatgGAGAACTGTATGCTGGCACTGTCAGTAATTTCCAAGGAAACGATCCCATCATTTACAAAAGTCTTGGCCAGGGCACAGCACTAAAGACTGAAAACTCACTGAACTGGCTTCAAGaCCCCGCTTTTGTGGGCTCAGCCTACATTCAGGAGAGTTTGCCCAAAGGCAATGCAGTGGGCGATGATGATAAGATTTACTTCTTCTTCAGTGAAGCAGGAAAGGAGTTCGATTTCTTTGACAACACTATTGTGTCACGCATCGCTCGCGTGTGTAAGGGTGATAAAGGTGGAGAGAGGGTTCTTCAGAAGAAATGGACGACCTTTCTGAAAGCCCAACTCCTGTGTTCACTGCCTGACGATGGCTTCCCCTTCAACATCATCCAAGACATGTTTGTACTGACGCCCAGCAAAGAAGACTGGAAGAAAACCATGTTTTATGGAGTCTTCACCTCACAGTGGTACAAAGGTGCTTCAGGGAGCTCAGCTGTATGTGCTTTCACTATGGACCAAGTTGAAGAGGCGTTTAATGGACGTTACCGGGAAGTTAATCGCGAGACGCAGCAGTGGTACACCTACAACCATCCAGTGCCAGAACCCAGACCTGGAGCCTGCATCACTAACACGGCCCGCGCCCAGGGGATCTCCTCTTCCCTGCACATGCCTGATAGAGTCCTGAACTTTGTGAAAGACCACTTCCTCATGGATAATGTGATTCGCAGTCAGCCTCTGCTGTTGAAACGAAATGTGCGCTACACGCAGCTCGCTGTGCACAGAGTACAGGCTCTCCACAAGACCTATGATGTGCTTTTCATTGGCACAGATGACGGCAGAATCCACAAAGCCATCAACGTTAAAAACAAGATGTATATCATTGAAGAGCTGGTGATTTTTCCTGAGCCTCAATCCGTGCAGCACATCGAACTGGATGATGAGAAGGGACTGTTGTTTGTGTCCAGCTATTCTGGGCTGGTGGAAATCCCTCTTGCCAACTGCTCTAACTACCAGAGCTGTGGAGAGTGTGTGCTGTCTAGAGACCCATACTGCGCCTGGACAGGGAAGCAGTGTTCTAATGTCAAGCATGCGTCCTCTAAGAGTCAATGGCAACAAGATGTAGAAGATGCCAACACTGCCATTTGCAAAATGCCCAGTCCCCGTTCAGGAAGACCACGTGTTCCAGCATGCCATGTGGTAGAAATCCCAGCAAACACATTTACAGTTCTACCCTGCAAACTGCGATCCAATTTAGCTGCAAGACGATGGGAGTACAGTGATACCGCAGAGCGTTTTGTCTACCCAAGTCCTGATGGCGGCCTGGTGGTTGTAGCCCAAGTGGACAGGCAGGAAAACTACGCGTGTTGGTCCGAAGAAGGCAACTATCGGCAACTTCTGGCCAGTTACTGTGTTAAAGCGGAGCACGAAAGCACCACCCTGACTGGACGTTCCCGAACACAGCAGGTGACCCAAGGAGAGACTATTCTACCTGGCGAAACGTGGTCACCACAAAAAACCAAAACATACTGGAATGAGCTGATTGTTGTGTGTGCCTTACTCGTGTTCTCCCTAGTAGTACTGTCGCTTTTTGTGGCGTACAGGAATCGAGATAGGATGAAGTCCATGTTAAAGGAAGGCGAGTGTCCTAACATGCAACAGAAGAAGCCGCGAATTCCAGGGAAGCACACTGAAAGCCTTCCGTTAAATGGCAACAACATCCCGCCCTCAGTGTCCGACCACAAGGGCTACCAGACTCTTAATGACAACTACATCTGCAGCACTCCAACCCACGAATGTTCCTCTCCCGAAAACAGCAAGAGCTTCTCAGAGTCTGAAAAGAGACTGTTGACTGTTAACTTAAAGGAGAGCCATGTGGAGATCTCACCCACTTGCCCGCGGCCTCGGGTACGACTAGGCTCGGAGATTAAAGACTCCATTGTTTAA
>TCONS_00026559
GGGAGGAGCAGTGATTAAGCCAGAAGGAGGCTTTACTCCAGCAGCGTGTCAGATACACACAGTCACAGCAGCACACAGAGCACGAGCGTGAGCTTCGTACTACCAACCTCACATTCAGACCAACATACAGCTGATACTGGCCGTCTCATAAGCTGGATCTATTGACAGAACTCTGATTTCCTTTGGGATTCCCTTCTGCTTTCCCCCCCATGAGGAACCAGCTGAAAATCTATCCTAAAAAGAATTGCTGAACACAACACATTGTGGGAGTCTCATGGAGACTGATTTGTGCTGTACCGCTGTCCTTGAGGACTCAATTCTTGGTAGAAATCCACCATTGTGAGGCCCTGTGAAGGTGACCCCAAATCCTCAACACACAGCCCTGCTTTTCAGGAGCTTGAGGAGTAGAAGAAAAagaaactgtaaaaaaaagatcTTCATGAGAGCCCGAAAATCTAGAGTCACAAAATGTGGACACTAAACATGACACGTGTCTTTTTCCTGTTCCTCCTCAACGTCCTCCTGGTCGGACGGTGTCAATCAGCAGAAGACGACGTCACCCCTCGCCTCAGCTTCTCTTACAATGCAAACGAGAGGTCGGCCAAGAGATTTTCACCCAGTGGAGTCTTCAATTACACCTCTCTGCTCCTCAGTAAAGAGGATAACATGCTGTACGTCGGCGCTCGAGAGACTCTCTTCGCACTTAATATCAGCGATATCAGCAGAACGCAGATGCAGCGCAACTTAACGTGGAGCACGCCGCAGAGAAAAAGAGATGAATGCAGTTTCAAAGGGAAGGACTTAAAGACGGACTGCTTCAATTACATCAAGATTTTACTGCGTGTGAACAGCACTCATCTGTACGTGTGTGGAACGTATGCCTTCAGTCCAATCTGCACATACATCAACACATCAAACTTTTCCCTGGTGCGCAATGAAGTGGGAGAAATAATGACTGAAGATGGTCGAAGCCGATGCCCCTATAACCCTGAATACAAGTCCACGGCCATCATGGCTGatgGAGAACTGTATGCTGGCACTGTCAGTAATTTCCAAGGAAACGATCCCATCATTTACAAAAGTCTTGGCCAGGGCACAGCACTAAAGACTGAAAACTCACTGAACTGGCTTCAAGaCCCCGCTTTTGTGGGCTCAGCCTACATTCAGGAGAGTTTGCCCAAAGGCAATGCAGTGGGCGATGATGATAAGATTTACTTCTTCTTCAGTGAAGCAGGAAAGGAGTTCGATTTCTTTGACAACACTATTGTGTCACGCATCGCTCGCGTGTGTAAGGGTGATAAAGGTGGAGAGAGGGTTCTTCAGAAGAAATGGACGACCTTTCTGAAAGCCCAACTCCTGTGTTCACTGCCTGACGATGGCTTCCCCTTCAACATCATCCAAGACATGTTTGTACTGACGCCCAGCAAAGAAGACTGGAAGAAAACCATGTTTTATGGAGTCTTCACCTCACAGTGGTACAAAGGTGCTTCAGGGAGCTCAGCTGTATGTGCTTTCACTATGGACCAAGTTGAAGAGGCGTTTAATGGACGTTACCGGGAAGTTAATCGCGAGACGCAGCAGTGGTACACCTACAACCATCCAGTGCCAGAACCCAGACCTGGAGCCTGCATCACTAACACGGCCCGCGCCCAGGGGATCTCCTCTTCCCTGCACATGCCTGATAGAGTCCTGAACTTTGTGAAAGACCACTTCCTCATGGATAATGTGATTCGCAGTCAGCCTCTGCTGTTGAAACGAAATGTGCGCTACACGCAGCTCGCTGTGCACAGAGTACAGGCTCTCCACAAGACCTATGATGTGCTTTTCATTGGCACAGATGACGGCAGAATCCACAAAGCCATCAACGTTAAAAACAAGATGTATATCATTGAAGAGCTGGTGATTTTTCCTGAGCCTCAATCCGTGCAGCACATCGAACTGGATGATGAGAAGGGACTGTTGTTTGTGTCCAGCTATTCTGGGCTGGTGGAAATCCCTCTTGCCAACTGCTCTAACTACCAGAGCTGTGGAGAGTGTGTGCTGTCTAGAGACCCATACTGCGCCTGGACAGGGAAGCAGTGTTCTAATGTCAAGCATGCGTCCTCTAAGAGTCAATGGCAACAAGATGTAGAAGATGCCAACACTGCCATTTGCAAAATGCCCAGTCCCCGTTCAGGAAGACCACGTGTTCCAGCATGCCATGTGGTAGAAATCCCAGCAAACACATTTACAGTTCTACCCTGCAAACTGCGATCCAATTTAGCTGCAAGACGATGGGAGTACAGTGATACCGCAGAGCGTTTTGTCTACCCAAGTCCTGATGGCGGCCTGGTGGTTGTAGCCCAAGTGGACAGGCAGGAAAACTACGCGTGTTGGTCCGAAGAAGGCAACTATCGGCAACTTCTGGCCAGTTACTGTGTTAAAGCGGAGCACGAAAGCACCACCCTGACTGGACGTTCCCGAACACAGCAGGTGACCCAAGGAGAGACTATTCTACCTGGCGAAACGTGGTCACCACAAAAAACCAAAACATACTGGAATGAGCTGATTGTTGTGTGTGCCTTACTCGTGTTCTCCCTAGTAGTACTGTCGCTTTTTGTGGCGTACAGGAATCGAGATAGGATGAAGTCCATGTTAAAGGAAGGCGAGTGTCCTAACATGCAACAGAAGAAGCCGCGAATTCCAGGGAAGCACACTGAAAGCCTTCCGTTAAATGGCAACAACATCCCGCCCTCAGTGTCCGACCACAAGGGCTACCAGACTCTTAATGACAACTACATCTGCAGCACTCCAACCCACGAATGTTCCTCTCCCGAAAACAGCAAGAGCTTCTCAGAGTCTGAAAAGAGACTGTTGACTGTTAACTTAAAGGAGAGCCATGTGGAGATCTCACCCACTTGCCCGCGGCCTCGGGTACGACTAGGCTCGGAGATTAAAGACTCCATTGTTTAA
>TCONS_00026560
GGAGGCTTTACTCCAGCAGCGTGTCAGATACACACAGTCACAGCAGCACACAGAGCACGAGCGTGAGCTTCGTACTACCAACCTCACATTCAGACCAACATACAGCTGATACTGGCCGTCTCATAAGCTGGATCTATTGACAGAACTCTGATTTCCTTTGGGATTCCCTTCTGCTTTCCCCCCCATGAGGAACCAGCTGAAAATCTATCCTAAAAAGAATTGCTGAACACAACACATTGTGGGAGTCTCATGGAGACTGATTTGTGCTGTACCGCTGTCCTTGAGGACTCAATTCTTGGTAGAAATCCACCATTGTGAGGCCCTGTGAAGGTGACCCCAAATCCTCAACACACAGCCCTGCTTTTCAGGAGCTTGAGGAGTAGAAGAAAAagaaactgtaaaaaaaagatcTTCATGAGAGCCCGAAAATCTAGAGTCACAAAATGTGGACACTAAACATGACACGTGTCTTTTTCCTGTTCCTCCTCAACGTCCTCCTGGTCGGACGGTGTCAATCAGCAGAAGACGACGTCACCCCTCGCCTCAGCTTCTCTTACAGTAAGTGCACAAGACAAGCGCATGCACAACTCACTCTGTCCATTTACTGAAAGTGCATAAAAGTGCCGCCTGCTATGGGAGACTATAAATAAAGGCTGATGTGGAGTCGACTTGAGAGCTCTTCGAGAGCTACGGGCTG

Function

symbol description
sema4ba Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Orthologous to human SEMA4B (semaphorin 4B).

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0050919 negative chemotaxis biological_process
GO:0048843 negative regulation of axon extension involved in axon guidance biological_process
GO:0007411 axon guidance biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0045499 chemorepellent activity molecular_function
GO:0030215 semaphorin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-31 Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Orthologous to human SEMA4B (semaphorin 4B).

Ensembl:

ensembl_id ENSDARG00000074414

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026557 False 2493 mRNA 0.49 14 25783446 25855263
TCONS_00026558 False 2912 mRNA 0.49 15 25783446 25905574
TCONS_00026559 False 2952 mRNA 0.49 15 25783446 25905623
TCONS_00026560 True 697 processed_transcript 0.48 2 25855010 25905598

Neighbor

gene id symbol gene type direction distance location
XLOC_013451 zgc:162879 coding downstream 11893 25754838 ~ 25771553 (-)
XLOC_013450 NA coding downstream 37825 25697275 ~ 25745621 (-)
XLOC_013449 si:ch211-13k12.2 coding downstream 137160 25563292 ~ 25646286 (-)
XLOC_013448 CR450716.1 coding downstream 266815 25515893 ~ 25516631 (-)
XLOC_013447 gnrhr4 coding downstream 380731 25391171 ~ 25402715 (-)
XLOC_013453 idh2 coding upstream 191191 26096814 ~ 26101800 (-)
XLOC_013454 CABZ01039782.1 coding upstream 219040 26124663 ~ 26126258 (-)
XLOC_013455 dre-mir-184-1 coding upstream 297680 26203303 ~ 26203389 (-)
XLOC_013456 CR352253.1 coding upstream 390542 26296165 ~ 26299843 (-)
XLOC_013457 FRMD5 coding upstream 554821 26460444 ~ 26675699 (-)
XLOC_013384 BX323829.1 misc downstream 6241215 19542102 ~ 19542231 (-)
XLOC_013445 NA non-coding downstream 558010 25180539 ~ 25225436 (-)
XLOC_013444 BX901968.2 non-coding downstream 624669 25158661 ~ 25158777 (-)
XLOC_013441 NA non-coding downstream 786376 24990268 ~ 24997070 (-)
XLOC_013467 NA non-coding upstream 1149223 27054846 ~ 27066350 (-)
XLOC_013468 CR936464.1 non-coding upstream 1231242 27136865 ~ 27136982 (-)
XLOC_013469 BX640463.3 non-coding upstream 1401301 27306924 ~ 27307040 (-)

Expression


Co-expression Network