CI01000339_00397469_00403594


Basic Information

Item Value
gene id CI01000339_00397469_00403594
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 397469 ~ 403594 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_00397469_00403594.mRNA
TTCTCAGGCTTCCAGCAGAGATACACGATTATTGGCTGGCACTGCGGTTGCAATGCTGCTCACCACGCCGTCAGAGAGTCAGTGTGCAGAATCAGCTGCCTGGAGTCTGCTGCAAATCACCAACACGGAACCATGGAGATTGACAGTAGGTGAGCTACAGGTGGACTGCCGTCCCACACGTCAAGATGGAGTGGACAGACTGGCTGTATGCAGGGGGTTGTTAACTTGCTGCAGAAATGACATTCTCGTCAGTCACCATGGCAACCAGGGGCACTTTGTGAAGAAAAGCTTGACTGTCATTACTATGTTTTTCAAGGTACAAGCTCTCTATCATCATGCGTCGTTCTACAGATTGCTGGGTCTGTGCATGACTGCAGTGACAAAAGTCATTGGTTGTATCCATATGTGTTTTGTAGTTTTTACTATCTGGCTGAAGAGGCTGAAAGAGTGTCTCAGTGAGGTTTGGGAAGTTACTGGTGCTCCTTTAGATTCAGACCTCCAACAGCAACTTACACAAATCATCTGGAGCAATGCAGAGAGCCCGTTGGATGGTGTTGCAGATGTGGCACGTAGTGCTTTCTGTCTCTTTATGGAGATATATGAGAAGGATTGTTTGCACTTTGGGAACGCAGAGAAAAGACTTTATGTGGAGTTATTGAACAGGATATCAGAACTGCCTTGGGAATCCAAAGCAAAGTATTTACCACTTACTGCAATTTTACCATACACAGGAACAGACAAGGAGCAGAAACGTGAGCTTTTCATAAATGCATCCCAAGAACCCCCGCCCACCGACCAAGACTTAGCCATTCAATGGGCTCGGAGATGGCAACCAGTCATCCTGGAGGCTTTGACTTCAGAATTAACTCTACTTCAAAATAATGCCTCTTGCCATCTTCTGCCAGCAACACTACGTGCATTTCCAGGTGCTTTTAACAGTCTGCTGTCAGCTCTGAATCCCACGACTCCCGGTCACCTTCATGCATGGGCCTGTGTCATGAGCGCCCAACGGGTCACAAGTGGACATTCCCTCTGGGGTGCAGACAGCCCCCATGCTCTCAAGACTCTCCGTCTTGCCCTCTCCTCTTTGGATGACAGCATCCGGCTTGCAGCTCTGAACCTCCTCTGCTGCAGTCCAAAGACTAAAGAAGCCCCATCACAAGTGGAGTATTCCACTCTGAGAGAATTCATCCCGCTCAATCTCAACAGCGAATCGTCACCGTTCCGTCAGCATCTTCAGGCAGCAATAAGGAAATTCTTGGTGAGAATAAGAGATAGTTGCATGGCAAGCATTAAGGGTCATAATAGTAAAAAAGGGCTCACAGAGGAAGAGGATGCAGAGCTTAAACAAGGAGTTGAGTTTGTTGACTGGCTCTCCCAGCTGTCATTGGTCTATTTGACTCCTGACAGCAGCTACCAGAGGAAGAAGACTGTCTTGCTCCTGCTGTCTGCAGTGCTTGAAACATGCACTGACACCTGGAGTCCAGACAGAAAGAAGGGACAACCACCTGCCAATATGTCTACTCTTATAAACTGGGCTAAAGAAAGGGGGAAGTGGGATTTCTTCTCAAAGTCAAAGCTGCTGGTCCTGATTGGATGTTTGGAGGATTCAACCAATGAGATCCGAGAGCTGTCTGCGGAGCTACTTCTCCGATTTTTCCCCCCATCTCTCCCTCATGATGTCACAGCTGTGCTGTTTAGCCGGGCAGAACGGCTGCTCCAGAGCCCACGGGTCCAGGAGGCCCAGATGGGGGCACTGATGATCAAACTGCTCCTGCAGAAGGTGGATGGTGCATTTGAACAGGGGGAGAAACAGTCACTTAAACTGATTACATTCCTTCTGACCAAACTACAACACCATTACCTCACTGCCAGAAATGACATGTTGCTTGCAGCTCGCACAACACCTATTCATGGCATTGTAAGTGCTCTGCAGAGGGGCTTGCTGGAGGTGCCAGGGGTCCTAGCAGAGTCAATAACCCAGAGTATTGCAGGAGACATTGTGTCTTTACTAGAAAAGCTTACTCTACTGCTGTTAGGTGTGCTGTATGGAGACCAGGACACTGAGGAGAAAGATGTGCCTCCATCGTTCTGTGACATGGGGAATGCAATCAGTTCTCTAATTGGTCAGGGTGGTGTTGAGAGGGGGGGACTTGATGAGGATGGAGAGGAGAATGTGTTGCTCTCTGAGGAACATAGTCTGGTGCTGACCTGCTGCTGGGTCTCCTTGAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_00397469_00403594.mRNA True 2233 mRNA 0.49 11 397469 403594

Neighbor

gene id symbol gene type direction distance location
CI01000339_00387189_00393407 NA coding downstream 4062 387013 ~ 393407 (-)
CI01000339_00376587_00383412 PIK3IP1 coding downstream 14057 376296 ~ 383412 (-)
CI01000339_00306275_00328002 NA coding downstream 69018 305862 ~ 328451 (-)
CI01000339_00269232_00284617 NA coding downstream 112601 269227 ~ 284868 (-)
CI01000339_00233236_00247333 WSCD2 coding downstream 149836 233166 ~ 247633 (-)
CI01000339_00403686_00405566 NA coding upstream 92 403686 ~ 405749 (-)
CI01000339_00416204_00453589 CAMK2G, NEWGENE_621802, CAMK2B coding upstream 11857 415451 ~ 453589 (-)
CI01000339_00481035_00496923 NA coding upstream 76910 480504 ~ 497237 (-)
CI01000339_00642674_00732431 TENM1 coding upstream 239080 642674 ~ 732431 (-)
CI01000339_00761812_00768938 NA coding upstream 358155 761749 ~ 769911 (-)
G481032 NA non-coding downstream 10986 385660 ~ 386483 (-)
G481102 NA non-coding downstream 66722 330248 ~ 330747 (-)
CI01000339_00199870_00204573 NA non-coding downstream 183982 198630 ~ 204636 (-)
G481075 NA non-coding downstream 237675 159472 ~ 159794 (-)
G480981 NA non-coding downstream 328025 43865 ~ 69444 (-)
G481124 NA non-coding upstream 70933 474527 ~ 475730 (-)
G481060 NA non-coding upstream 153131 556725 ~ 557127 (-)
G481034 NA non-coding upstream 155785 559379 ~ 563915 (-)
G481051 NA non-coding upstream 166493 570087 ~ 571491 (-)
G481037 NA non-coding upstream 172766 576360 ~ 578178 (-)
G480969 NA other downstream 307272 85093 ~ 90197 (-)
CI01000339_00932339_00951205 SMARCA1 other upstream 545223 931680 ~ 951205 (-)
G481157 NA other upstream 710535 1114129 ~ 1116148 (-)
G481610 NA other upstream 1167943 1571537 ~ 1573962 (-)
G481662 NA other upstream 1320176 1723770 ~ 1733019 (-)
CI01000339_01988812_02024891 NA other upstream 1585581 1988537 ~ 2025183 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030977 si:ch211-225b11.4 coding NC_007116.7 CM002889.2 20886282 ~ 20921677 (-)