Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_013455 (dre-mir-184-1)

Basic Information

Item	Value
gene id	XLOC_013455
gene name	dre-mir-184-1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007129.7
NCBI id	CM002902.2
chromosome length	51023478
location	26203303 ~ 26203389 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026563
GTCGAACACGTCTCCTTATCACTTTTCCAGCCCAGCTATCCATTTAGTATTCGTTGGACGGAGAACTGATAAGGGCATGTGCCCGAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000081763

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00026563	True	87	miRNA	0.48	1	26203303	26203389

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_013454	CABZ01039782.1	coding	downstream	77045	26124663 ~ 26126258 (-)
XLOC_013453	idh2	coding	downstream	101503	26096814 ~ 26101800 (-)
XLOC_013452	sema4ba	coding	downstream	297680	25783446 ~ 25905623 (-)
XLOC_013451	zgc:162879	coding	downstream	431750	25754838 ~ 25771553 (-)
XLOC_013450	NA	coding	downstream	457682	25697275 ~ 25745621 (-)
XLOC_013456	CR352253.1	coding	upstream	92776	26296165 ~ 26299843 (-)
XLOC_013457	FRMD5	coding	upstream	257055	26460444 ~ 26675699 (-)
XLOC_013458	malt3	coding	upstream	446471	26649860 ~ 26715655 (-)
XLOC_013459	kti12	coding	upstream	567578	26770967 ~ 26781692 (-)
XLOC_013460	nmba	coding	upstream	581579	26784968 ~ 26785861 (-)
XLOC_013384	BX323829.1	misc	downstream	6661072	19542102 ~ 19542231 (-)
XLOC_013448	CR450716.1	non-coding	downstream	686672	25515893 ~ 25516631 (-)
XLOC_013445	NA	non-coding	downstream	977867	25180539 ~ 25225436 (-)
XLOC_013444	BX901968.2	non-coding	downstream	1044526	25158661 ~ 25158777 (-)
XLOC_013441	NA	non-coding	downstream	1206233	24990268 ~ 24997070 (-)
XLOC_013467	NA	non-coding	upstream	851457	27054846 ~ 27066350 (-)
XLOC_013468	CR936464.1	non-coding	upstream	933476	27136865 ~ 27136982 (-)
XLOC_013469	BX640463.3	non-coding	upstream	1103535	27306924 ~ 27307040 (-)
XLOC_013471	BX640463.1	non-coding	upstream	1131552	27334941 ~ 27335059 (-)

Expression

Co-expression Network