XLOC_013456 (CR352253.1)


Basic Information

Item Value
gene id XLOC_013456
gene name CR352253.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26296165 ~ 26299843 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026564
gattacaattttttttttaattgtttcgtCATAACATTTGGCTGTTCCCAGAGAGCAGACTGATTCCTTAAAGAATTTTTCCAAACAATGTGGGGAATTTGGTGCTGATAAATTAAGTGGAGCTGCAAGATTTACAACAACCAATCAGCCAATTGTCATAAGACACTAAAAGCTGAAGCACTGCCGTCACGCAAGTAATGATTTATTCTGAAGAAAAGCTGAACATAGGGATGACTCTTGGAAATCAGAAACTGTTGATGAACACTGGTGCAGATATTGGCAGTGCACAACTTCACTCacttaaaaatacattgaaatacaGATGCTGAGATAAAagttttgggtcacactttacaataaggttcattagttaatgttaattaatgcattcactaacatgaacaaacaatgaacaatacatctactactgtatttgttcatgttagtttaagttagttaatgaaaatacagtagttcattgttagttcaagttaactcatggtgcattaactaatgttaacaagcatggacttggatgttaaaattgcatcagtaaatgttcaattatgattaataaatggtgTACAGTACatctgttgttcatgattagtttatgttagtaaatgcattaactaatgaaccttattgtaaaatgttaccaagTTTTGGTGACGTTATGGTGTAATTTTTTTCCAAGAGCCTGTGTTAGTTGTGTATTTTAGagatttcaagtttttttttcttctcttgtgATTACTCTCACTTTACAATCAATTTGTAAAAATACTTAATTAAGAGTAAATAcctttaataaaaatgtgtattgc
>TCONS_00027347
GCACCATTAGGTCATAGTTTGCCAAATGTCAGTTAAACACAAGAAGAAGTCAGACACATGGGATAttgattacaattttttttttaattgtttcgtCATAACATTTGGCTGTTCCCAGAGAGCAGACTGATTCCTTAAAGAATTTTTCCAAACAATGTGGGGAATTTGGTGCTGATAAATTAAGTGGAGCTGCAAGATTTACAACAACCAATCAGCCAATTGTCATAAGACACTAAAAGCTGAAGCACTGCCGTCACGCAAGTAATGATTTGTAGATTCTGAAGAAAAGCTGAACATAGGGATGACTCTTGGAAATCAGAAACTGTTGATGAACACTGGTGCAGATATTGGCAGTGCACAACTTCACTCacttaaaaatacattgaaatacaGATGCTGAGATAAAagttttgggtcacactttacaataaggttcattagttaatgttaattaatgcattcactaacatgaacaaacaatgaacaatacatctactactgtatttgttcatgttagtttaagttagttaatgaaaatacagtagttcattgttagttcaagttaactcatggtgcattaactaatgttaacaagcatggacttggatgttaaaattgcatcagtaaatgttcaattatgattaataaatggtgTACAGTACatctgttgttcatgattagtttatgttagtaaatgcattaactaatgaaccttattgtaaaatgttaccaagTTTTGGTGACGTTATGGTGTAATTTTTTTCCAAGAGCCTGTGTTAGTTGTGTATTTTAGagatttcaagtttttttttcttctcttgtgATTACTCTCACTTTACAATCAATTTGTAAAAATACTTAATTAAGAGTAAATAcctttaataaaaatgtgtattgc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096320

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026564 False 827 lncRNA 0.31 4 26296165 26299776
TCONS_00027347 True 898 lncRNA 0.32 4 26296165 26299843

Neighbor

gene id symbol gene type direction distance location
XLOC_013455 dre-mir-184-1 coding downstream 92776 26203303 ~ 26203389 (-)
XLOC_013454 CABZ01039782.1 coding downstream 169907 26124663 ~ 26126258 (-)
XLOC_013453 idh2 coding downstream 194365 26096814 ~ 26101800 (-)
XLOC_013452 sema4ba coding downstream 390542 25783446 ~ 25905623 (-)
XLOC_013451 zgc:162879 coding downstream 524612 25754838 ~ 25771553 (-)
XLOC_013457 FRMD5 coding upstream 160601 26460444 ~ 26675699 (-)
XLOC_013458 malt3 coding upstream 350017 26649860 ~ 26715655 (-)
XLOC_013459 kti12 coding upstream 471124 26770967 ~ 26781692 (-)
XLOC_013460 nmba coding upstream 485125 26784968 ~ 26785861 (-)
XLOC_013461 sec11a coding upstream 488240 26788083 ~ 26797723 (-)
XLOC_013384 BX323829.1 misc downstream 6753934 19542102 ~ 19542231 (-)
XLOC_013450 NA non-coding downstream 550544 25697275 ~ 25745621 (-)
XLOC_013448 CR450716.1 non-coding downstream 779534 25515893 ~ 25516631 (-)
XLOC_013445 NA non-coding downstream 1070729 25180539 ~ 25225436 (-)
XLOC_013444 BX901968.2 non-coding downstream 1137388 25158661 ~ 25158777 (-)
XLOC_013467 NA non-coding upstream 755003 27054846 ~ 27066350 (-)
XLOC_013468 CR936464.1 non-coding upstream 837022 27136865 ~ 27136982 (-)
XLOC_013469 BX640463.3 non-coding upstream 1007081 27306924 ~ 27307040 (-)
XLOC_013471 BX640463.1 non-coding upstream 1035098 27334941 ~ 27335059 (-)
XLOC_013472 NA non-coding upstream 1058485 27358328 ~ 27362251 (-)

Expression


Co-expression Network