XLOC_013457 (FRMD5)


Basic Information

Item Value
gene id XLOC_013457
gene name FRMD5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26460444 ~ 26675699 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026565
ATGATGTTGAGTCGCCTGATGAGTGGAAGCGTCAGAAACCTGGAGCGGGAATACATGTGCACGGTCAGACTGCTGGACGATACGGAGTATACCTGCACCATTCAGAGGGATGCCAAAGGCCAGTATTTGTTCGACCTCATCTGCCACCATCTAAACCTGCTGGAGAAGGACTATTTTGGCATTAGATATGTCGATCCGGATAAGCAACGGCATTGGCTGGAGTTCACCAAGTCAATTTCGAAGCAGATGAAATCACAACCTCCTTTTACCATGTGTCTGCGTGTGAAGTTCTACCCACCAGATCCTGCTGCTCTAAAGGAGGAGATCACCAGGTATCTCGTCTTCCTGCAGATTAAGAGAGATTTGTATCATGGTCGTCTCCTTTGCAAAACATCTGACGCGGCCATGTTGGCAGCTTACATCTTACAAGCTGAGATTGGAGATTACGACCCAGGAAAGCATCCAGAGGGCTACAGCTCCAAGTTCCAGTTTTTCCCCAAGCACTCAGAGAAGCTGGAACGAAGGATTGCGGAGATTCACAAGACGGAGTTAATAGGTCAAACCCCAGAGACTTCTGAGCTGAAGTTCTTGCAGAAAGCACAAATGCTTGAAACATACGGTGTGGATCCTCATCCGTGCAAGGATGTATCTGGGAACCCTGCTTTCCTCGCCTTCACTCCGTTCGGTTTTGTCGTGCTTCAGGGGAACAAGAGAGTTCATTTCCTCAAGTGGAACGAAGTGACCAAACTGAAGTTTGAGGGAAAGACCTTCCATATATATGCAAATCAGAAAGAGGACAAAAAGATCATCTTGACATACTTTGCACCCACCCCAGAGGCCTGCAAGCACCTTTGGAAATGCGGTGTTGAAAATCAAGCCTTCTACAAGTTGGAGAAGTCGAGCCAGGTTCGCACAGTGTCCAGCagtaaccttttttttaaaggcaGTCGCTTCCGCTACAGtgGAAGAGTAGCCAAAGAGGTAATGGAGCAGAGTGCAAAAATTAAAAGGGAGCCTCCAGAAATACACAGGGCTGGCCTGGTGCCTAGCAGGAGCTGTCCATCTATCACTCACGGGCCGCGACTAAGCAGTGTCCCTCGCACCCGCCGGAGAGCGGTACACATCTCCATCATGGAAGGACTGGAATCCTTGCGGGACAGTGCCCACTCCACTCCAGTGCGCTCCGTGTCCCATGGCGACTCCTTTATGCCACGTTCGCGAAGCCAGATGACGGACTCCGGTGACAGGACAGCGATAATCTCTGATGAGAGCTACAGTCCCTCCGACAGCGTTCTGCCCACACCAGTAGCAGAGCACAGCCTGGAGCTGGCAGTCTCACGCCAGATCAACGGCGCCCCCTGCAGCATAGAGGAGGAGAAGGAGTCGGAGGCGGGTACGCCCTCCGTGGGCGATGTGGCTGAATTTGGCGCAGACAGTAGGGCGGCGGGCCCCATGCAGATCGCTGGCAGGGAGGCCCCGCTCAGTGAAGCTGAACAGGTGAATAAGTTTGTTTTAAGTGTACTCCGTCTGCTCCTTGTGACCATTGGACTCCTCTTTGTCTTGCTCCTCCTCCTCATCGTCCTCACCGAGTCCGATCTTGACATTGCATTTTTACGTGATATCCGCCAGACCCCCGAGTTTGAGCAGTTCCATTACGAATACTTTTGTCCCCTCAGACGGTGGTTTGCCTGCAAGCTCCGCTGGGTGGGCGGGCTGCTCATTAACAAGTGA
>TCONS_00026566
AGGGATGCCAAAGGCCAGTATTTGTTCGACCTCATCTGCCACCATCTAAACCTGCTGGAGAAGGACTATTTTGGCATTAGATATGTCGATCCGGATAAGCAACGGCATTGGCTGGAGTTCACCAAGTCAATTTCGAAGCAGATGAAATCACAACCTCCTTTTACCATGTGTCTGCGTGTGAAGTTCTACCCACCAGATCCTGCTGCTCTAAAGGAGGAGATCACCAGGTATCTCGTCTTCCTGCAGATTAAGAGAGATTTGTATCATGGTCGTCTCCTTTGCAAAACATCTGACGCGGCCATGTTGGCAGCTTACATCTTACAAGCTGAGATTGGAGATTACGACCCAGGAAAGCATCCAGAGGGCTACAGCTCCAAGTTCCAGTTTTTCCCCAAGCACTCAGAGAAGCTGGAACGAAGGATTGCGGAGATTCACAAGACGGAGTTAATAGGTCAAACCCCAGAGACTTCTGAGCTGAAGTTCTTGCAGAAAGCACAAATGCTTGAAACATACGGTGTGGATCCTCATCCGTGCAAG

Function

symbol description
frmd5 Predicted to be located in cytoskeleton and membrane. Predicted to be integral component of membrane. Orthologous to human FRMD5 (FERM domain containing 5).

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-165 Predicted to be located in cytoskeleton and membrane. Predicted to be integral component of membrane. Orthologous to human FRMD5 (FERM domain containing 5).

Ensembl:

ensembl_id ENSDARG00000075942

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026565 False 1731 mRNA 0.52 14 26460444 26675699
TCONS_00026566 True 537 mRNA 0.47 6 26482375 26510545

Neighbor

gene id symbol gene type direction distance location
XLOC_013456 CR352253.1 coding downstream 160601 26296165 ~ 26299843 (-)
XLOC_013455 dre-mir-184-1 coding downstream 257055 26203303 ~ 26203389 (-)
XLOC_013454 CABZ01039782.1 coding downstream 334186 26124663 ~ 26126258 (-)
XLOC_013453 idh2 coding downstream 358644 26096814 ~ 26101800 (-)
XLOC_013452 sema4ba coding downstream 554821 25783446 ~ 25905623 (-)
XLOC_013459 kti12 coding upstream 95268 26770967 ~ 26781692 (-)
XLOC_013460 nmba coding upstream 109269 26784968 ~ 26785861 (-)
XLOC_013461 sec11a coding upstream 112384 26788083 ~ 26797723 (-)
XLOC_013462 znf592 coding upstream 124362 26800061 ~ 26811959 (-)
XLOC_013463 ch25hl1.1 coding upstream 178192 26853891 ~ 26854959 (-)
XLOC_013384 BX323829.1 misc downstream 6918213 19542102 ~ 19542231 (-)
XLOC_013450 NA non-coding downstream 714823 25697275 ~ 25745621 (-)
XLOC_013448 CR450716.1 non-coding downstream 943813 25515893 ~ 25516631 (-)
XLOC_013445 NA non-coding downstream 1235008 25180539 ~ 25225436 (-)
XLOC_013467 NA non-coding upstream 379147 27054846 ~ 27066350 (-)
XLOC_013468 CR936464.1 non-coding upstream 461166 27136865 ~ 27136982 (-)
XLOC_013469 BX640463.3 non-coding upstream 631225 27306924 ~ 27307040 (-)
XLOC_013471 BX640463.1 non-coding upstream 659242 27334941 ~ 27335059 (-)
XLOC_013472 NA non-coding upstream 682629 27358328 ~ 27362251 (-)

Expression


Co-expression Network