XLOC_013459 (kti12)


Basic Information

Item Value
gene id XLOC_013459
gene name kti12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26770967 ~ 26781692 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026569
ATTATACGTCGActgtctaataaaaaaaaatctgtcgcCTTTTCACCAGTGACCTGTAGAGGGCAGCAGCGCACTAATCTTACGACATTCTACGAGCGCGAAGAAGAACATCATCTCCCGTGTAACATTACTGTGTACATAAGCATGGTatagattttagttttttttatttcttttgcgCTAAAATGCCTTTAATATTGATGTGTGGATACCCGTGCAGTGGTAAAACCAGACGAGCACAGGAACTCAGAGACTACTTCACACAAAACACAGGAAGAAAGGTTCATATTGTTGGAGATGAAGATCAAGGAATTGACAAGAACTCTGTTTATGCAGactcGCAGAAGGAGAAGAACCTGAGAGGAGCACTGAGAGCTGAAGTGGAGAGGAAAGTCAATAAAGATGACATTGTGATTCTTGATTCCTTAAATTACATTAAAGGCTACAGATATGAGCTGTTTTGTCTCatcaaacatacacaaacacctcACTGCTTGGTGTACTCTTTGACGTCAGCTGACTTGAGCTCAGAATGGAATAAAGACAGAGAGGCAGATTCTCAGTACACTCAGGAAATCCTTGATGCGCTAATCCTGCGTTTTGAAGCCCCTGATTCAAGAAATAGATGGGATAGTCCCCTCTTTACTATTCAGCAAGACGACTCGCTTCCATTTGAAGCCATCTGTGATGCGCTATTTAAAAGAAAAGCACCACCACCTAATCAGTCCACGAAGAGCCAACCACTCTCATCCACAAACTTTCTGTACGAGTTGGACAAAGTTACTCAAGATGTGCTAATGGCTGTTCTTGAGTCACAGAAGACCAGCGTCCCCGGAGATCTCATTTCCATTCCTGGAGCCACAGAAAAGATTGAACTCACAAGAAGTCTTAACATGGTGGAGCTGAGGAAACTCAGACGTCAGTTCATCAGTTACACCAAGATGCACCCAACAGAGAACATTGGACAGATTGCCAATATGTTTGTGCAGTATCTTAATAAGAGCATGCATTAACAGGTGTTTTTCTTATTGTAATTCTtcaggaaatatttattttttaagttgcaTTTTAACAACATTTCAAGTGCAATAAAATGTCAATTCTTATCATGTCTTTTTATATCCACTGATGTATTTATACATTCACCCAACAATGagattttactcattatttactcactcttaagtGGTTTCAACCCTTTAAAACTTTCTTCATTTTCTTAAACACAGATGATGATAATTTAAACAATTCTGGAAAAAAATGCCCTGacagtcaatggctactggtttccaacattcttcaaaatatattttgttaaacagaagaaagaaattcaaagagGTTTGAAAACAACAGAGGAAGAGTGAATGATGACACAACAACTATCTCTTTAAGGAGTAATGGGCAAagtatgttgtgttttttatcaTGTAACAAAAGCTACTTTTCTTGATAAGGGCCTATAATGCCCATTGTTTACAAGATGCGAAACAATACTCTGATGTCCCTAGTGTgtctatgtgaagtttcagctcaaaataccccacataTAATGTTTTGTTGCTATTTGAAGCTGCACCTTTTAGGCTTCGATCcttattgtgccattttggtgactgtcactttaaatttaaatgagattgctGATATTATCTTACAGGAGTACTGTATTGAATtgtaaaatatatcaaaataaacagtaaaaatcaaataatttaaaacattaaatctaCAGTCTGAAATTGGTTTAAATAGAATATTAATCAAATTTTTAGTGACTAATGTGTAAACTTTGTACTACCATATACTTTTAGAAATACAATAGgacattttatttacaaatgcatACTTTGAAagtaaattatgaaaaaaaaattgtaaaac
>TCONS_00026570
ATCTTACGACATTCTACGAGCGCGAAGAAGAACATCATCTCCCGTGTAACATTACTGTGTACATAAGCATGGTatagattttagttttttttatttcttttgcgCTAAAATGCCTTTAATATTGATGTGTGGATACCCGTGCAGTGGTAAAACCAGACGAGCACAGGAACTCAGAGACTACTTCACACAAAACACAGGAAGAAAGGTTCATATTGTTGGAGATGAAGATCAAGGAATTGACAAGAACTCTGTTTATGCAGactcGCAGAAGGAGAAGAACCTGAGAGGAGCACTGAGAGCTGAAGTGGAGAGGAAAGTCAATAAAGATGACATTGTGATTCTTGATTCCTTAAATTACATTAAAGGCTACAGATATGAGCTGTTTTGTCTCatcaaacatacacaaacacctcACTGCTTGGTGTACTCTTTGACGTCAGCTGACTTGAGCTCAGAATGGAATAAAGACAGAGAGGCAGATTCTCAGTACACTCAGGAAATCCTTGATGCGCTAATCCTGCGTTTTGAAGCCCCTGATTCAAGAAATAGATGGGATAGTCCCCTCTTTACTATTCAGCAAGACGACTCGCTTCCATTTGAAGCCATCTGTGATGCGCTATTTAAAAGAAAAGCACCACCACCTAATCAGTCCACGAAGAGCCAACCACTCTCATCCACAAACTTTCTGTACGAGTTGGACAAAGTTACTCAAGATGTGCTAATGGCTGTTCTTGAGTCACAGAAGACCAGCGTCCCCGGAGATCTCATTTCCATTCCTGGAGCCACAGAAAAGATTGAACTCACAAGAAGTCTTAACATGGTGGAGCTGAGGAAACTCAGACGTCAGTTCATCAGTTACACCAAGATGCACCCAACAGAGAACATTGGACAGATTGCCAATATGTTTGTGCAGTATCTTAATAAGAGCATGCATTAACAGGTGTTTTTCTTATTGTAATTCTtcaggaaatatttattttttaagttgcaTTTTAACAACATTTCAAGTGCAATAAAATGTCAATTCTTA

Function

symbol description
kti12 Predicted to enable ATP binding activity. Orthologous to human KTI12 (KTI12 chromatin associated homolog).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0002098 tRNA wobble uridine modification biological_process
GO:0033588 elongator holoenzyme complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-060825-174 Predicted to enable ATP binding activity. Orthologous to human KTI12 (KTI12 chromatin associated homolog).

Ensembl:

ensembl_id ENSDARG00000054301

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026569 False 1884 mRNA 0.36 9 26770967 26781692
TCONS_00026570 True 1030 mRNA 0.40 9 26771745 26781616

Neighbor

gene id symbol gene type direction distance location
XLOC_013458 malt3 coding downstream 55312 26649860 ~ 26715655 (-)
XLOC_013457 FRMD5 coding downstream 95268 26460444 ~ 26675699 (-)
XLOC_013456 CR352253.1 coding downstream 471124 26296165 ~ 26299843 (-)
XLOC_013455 dre-mir-184-1 coding downstream 567578 26203303 ~ 26203389 (-)
XLOC_013454 CABZ01039782.1 coding downstream 644709 26124663 ~ 26126258 (-)
XLOC_013460 nmba coding upstream 3276 26784968 ~ 26785861 (-)
XLOC_013461 sec11a coding upstream 6391 26788083 ~ 26797723 (-)
XLOC_013462 znf592 coding upstream 18369 26800061 ~ 26811959 (-)
XLOC_013463 ch25hl1.1 coding upstream 72199 26853891 ~ 26854959 (-)
XLOC_013464 si:dkey-24l11.2 coding upstream 81447 26863139 ~ 26894770 (-)
XLOC_013384 BX323829.1 misc downstream 7228736 19542102 ~ 19542231 (-)
XLOC_013450 NA non-coding downstream 1025346 25697275 ~ 25745621 (-)
XLOC_013448 CR450716.1 non-coding downstream 1254336 25515893 ~ 25516631 (-)
XLOC_013445 NA non-coding downstream 1545531 25180539 ~ 25225436 (-)
XLOC_013467 NA non-coding upstream 273154 27054846 ~ 27066350 (-)
XLOC_013468 CR936464.1 non-coding upstream 355173 27136865 ~ 27136982 (-)
XLOC_013469 BX640463.3 non-coding upstream 525232 27306924 ~ 27307040 (-)
XLOC_013471 BX640463.1 non-coding upstream 553249 27334941 ~ 27335059 (-)
XLOC_013472 NA non-coding upstream 576636 27358328 ~ 27362251 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01079992_00000756_00001983 KTI12 coding CI01079992 null 756 ~ 2046 (+)