XLOC_013460 (nmba)


Basic Information

Item Value
gene id XLOC_013460
gene name nmba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26784968 ~ 26785861 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026571
GGAATCCGCCGAGAGTTACCTGAGAAGATGGCTGATGATGGACATTGCAAATATACATTGTTATTCGCGCTCATAATGCTTTTCAACGTATCACTGAGCACTTCAGTCAGTCTCGATTTAACGGAGCTGCGAAATAAAGTTTCGAAAATAAAAGTGCATCCACGTGGAAATCTTTGGGCAACAGGTCATTTTATGGGCAAAAAGAGCATTTCAAACAGCCAGCTCCAGGATTCCCCGTTCCCCGTAAAACCAGATAGGAATATTATGGGAGAATCAGGGAGTTCAGAGGATTTGAAGGAGCTCATCACTCAGGAGATGCTGAAAATTGCTCTTCAGGCTCAGCTTGAAGATCCAAAAAGGACACGAGATGTTTATAATCAGGTGATTAGAGAGATATTTAAAGAATTGGCCAACAGGATGTGAATAGTTAATTGAATGTAAATTgtgatgcattttatttattcttttttttcaggaTAAAGACTTCATGGTAAAGCTTATGAAAAACTTAATTGAAAAAGTAAATTTATAGCGAAAGTGCAAtggatttaaatgtaataaaattgacAAACCTTAACATTGTGTACCAAATGTATATGCAAGTCTGCTTTTAATGtttgttaaatacttattaatGATGTATTTTGGCAGCAGAAAGTGTCAAATGTTATGAAGGCAAATCAATATTTTGCATTCAGATGtctgtctgaatatccgaatgatCGGATGAGTGAGTGAATTGATTAATAGATGAGTGAATGTGTTAAGTAAGTTATTAAACAAatctgtattttgaaaaataaatatgaaactgCAAA

Function

symbol description
nmba Predicted to enable neuromedin B receptor binding activity and neuropeptide hormone activity. Predicted to be involved in positive regulation of hormone secretion. Predicted to act upstream of or within neuropeptide signaling pathway. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Human ortholog(s) of this gene implicated in obesity. Orthologous to human NMB (neuromedin B).

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0046887 positive regulation of hormone secretion biological_process
GO:0043005 neuron projection cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005184 neuropeptide hormone activity molecular_function
GO:0031710 neuromedin B receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-3 Predicted to enable neuromedin B receptor binding activity and neuropeptide hormone activity. Predicted to be involved in positive regulation of hormone secretion. Predicted to act upstream of or within neuropeptide signaling pathway. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Human ortholog(s) of this gene implicated in obesity. Orthologous to human NMB (neuromedin B).

Ensembl:

ensembl_id ENSDARG00000068144

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026571 True 818 mRNA 0.35 2 26784968 26785861

Neighbor

gene id symbol gene type direction distance location
XLOC_013459 kti12 coding downstream 3276 26770967 ~ 26781692 (-)
XLOC_013458 malt3 coding downstream 69313 26649860 ~ 26715655 (-)
XLOC_013457 FRMD5 coding downstream 109269 26460444 ~ 26675699 (-)
XLOC_013456 CR352253.1 coding downstream 485125 26296165 ~ 26299843 (-)
XLOC_013455 dre-mir-184-1 coding downstream 581579 26203303 ~ 26203389 (-)
XLOC_013461 sec11a coding upstream 2222 26788083 ~ 26797723 (-)
XLOC_013462 znf592 coding upstream 14200 26800061 ~ 26811959 (-)
XLOC_013463 ch25hl1.1 coding upstream 68030 26853891 ~ 26854959 (-)
XLOC_013464 si:dkey-24l11.2 coding upstream 77278 26863139 ~ 26894770 (-)
XLOC_013465 pstpip1a coding upstream 145095 26930956 ~ 26963473 (-)
XLOC_013384 BX323829.1 misc downstream 7242737 19542102 ~ 19542231 (-)
XLOC_013450 NA non-coding downstream 1039347 25697275 ~ 25745621 (-)
XLOC_013448 CR450716.1 non-coding downstream 1268337 25515893 ~ 25516631 (-)
XLOC_013445 NA non-coding downstream 1559532 25180539 ~ 25225436 (-)
XLOC_013467 NA non-coding upstream 268985 27054846 ~ 27066350 (-)
XLOC_013468 CR936464.1 non-coding upstream 351004 27136865 ~ 27136982 (-)
XLOC_013469 BX640463.3 non-coding upstream 521063 27306924 ~ 27307040 (-)
XLOC_013471 BX640463.1 non-coding upstream 549080 27334941 ~ 27335059 (-)
XLOC_013472 NA non-coding upstream 572467 27358328 ~ 27362251 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_00505245_00505730 NMBA coding CI01000013 null 505106 ~ 505789 (-)