XLOC_013464 (si:dkey-24l11.2)


Basic Information

Item Value
gene id XLOC_013464
gene name si:dkey-24l11.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26863139 ~ 26894770 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026575
TGTGAGAAATGTGGAGCAGACATCAGAGCTGCCTTCAGGCCCAGTATGCTGCACCACTACAGTGATGTTTTAGGCTATCTGGACCTACACGCAGCTGTTCCTGTAGATCTTGTACTGCAGGACTCTCAGTTCAGTGTGGGCTGCCTCAACTGCAACAAGGAGGATATAATTCAGAATCTGACCTATGGCCAAAACTGGGAGCAAAACTGCCAACATTGTCATTTTAAACTCAGCATATTTGTGGAGGCGACACGTTTTCAATTCATTCAGCCGGAGACCAAAAATCAGACAGGTGCAGCTGGTCAATATCCTCGACGTTACAGGGACCCTGCAGTTCAGCAAGGAAAACCTCTTCCTGATAAAGGTGCCTGCAAGCATTTTAAACAAAGTCACCGGTGGCTAAGATTTCCATGCTGTGGTCGGGCATACCCGTGCGACGCATGCCATGATGAAGACCAGGACCATTTAATGGAGCTGGCCACCAGAATGATCTGCGGTTACTGTGCCAAAGAGCAGCCATACTGCAATGGTAAGCCGTGTGTTGGCTGTGGAGGCATGATGACAAGAGGAGCCTTTACAAGCTATTGGGAGGGCGGACAGGGCTGCAGGAACAAGATTAAGATGAACAGGAACGACCGGCACAAATATGCCAACACATCGAAAACAGTGCCAAAGAaagcacaaaaagaaaaaaagtaaagacACCAGAGGTTTTTCTCCTTTTTCTTGATCTAATTCAGATCATCAAGTCACGTTTTTTCCTCCTCGGATGATTTCACAGAGTTGTTTTTTTGCGATGTACaattcatttcaaaataaaacagcTGACAGGTTTTGCAATATTCAGCGCGAGGATCTGTGTCCactttttgtattgttttcatCTGTCTTTTTGCTTGCTGTTAGAAATCAACATTAATAATGTGTATAAATACAAGTGCaccttaatttgtaaattgttgAAATGAATAATTTCAACTTAAAATTTTGAACTTGCTAAAGGTTATAGTCATTAGGGatttttgtaacaattttaaaattaaaatcccTGGTAATCCCTTTTTCATAAAGCACCAatttaaaaagtttcaaattaTTGTTACTTTTATCCAAAATACATGTAAAGCGGTGCAATGAGCCGAATATGAAATGCAGAAGATTGCTGTTTTCCATCAGTCTAAATGAAATAAACTTgtgtaaaaagtaaa
>TCONS_00026576
CATGTAACACACACCTTCCAATCTTAGAAACTGGTATGTTATGCTAACGCAAAGGTAAACGTAGTCATTGACAGACAGCAACAGCTATAAGCACTGAAGTATTGGACAGTTTACATTGACTACAGGGTGTTTGTCGATCTAATGGAGTCAGAAAGTGCGGGTGTGGCGCAGtcacTAGATCCTAAGGATGAACCAACAACTTCACCAGTGTCAGTTGACACTAAAAAGGAAAACTCAGGCCGTGATACTGAGATAAGCAGCAAAGATGTTTCCCAAAAGGCTGAACGGGTGCAGCAATTGTGTCGCTTCTACTCTCAGGGCAGGCGATGCTATTATGGAAAAAGGTGCCACTTTCTTCATCAGAGAGCTTCAGGTGCACCAAAAGATGGAGAAAATGGTACATCTCATAAGGAGAAAGAAGCAAAAGAGCCACAGCAACAGCTAAGTGAAAACAGCCAACCCACTACAGAAGATCTTCCACCTCCATCTAACCATAAACCTGctcctgtgaggcaacagagaGCCAGAAGACCATGTCGCTACTTCCTCTCAGGGTTTTGTGCTATGGAGGATCGATGTCGTTTTTTGCATCCACAAGAGTTTCCGCCGGTGGAGGACAAACATCAAGGTCCGAAAGAGAGGAGCAGCTTCAGGCCTAACGCTCCAGCTATGCGTCCCGCTAAAAGTCACGAGCAGGTCAAACTGGCTGAGCTCACAGAAGAAGTCTGCAAGCAGCTGCGAGAAACGGAGATCGCTCAGCTGATGAAGAGATTCCCCAAAGACAAGCTCATCATCCAGGAGCGAGAAGATGGACAGCTCACTTACTACAGAGTCACAGTTGAAGCCACCGATCCTGACTGGCCTTTTGACCTCAATGAAGTGGACATCATGGTCAGCTTTCCCGAGAGTTACCCTCAAGAGGCTTTCACTGTGGATGTCCCTGAGGACCAGGACTTACCGTCACTAATGGGAAGACATGTTCAGAAGGCCTCAGAGGAATGGCTGAGGGCTAAACATGCCACCAATCAGCTGATGGGAAGAGTTGAGCTGCTTTTTAGGCCGTACTTGCGCTGGCTGGACCGCAGTATGGAGAAACTCTTCACTGAGGGAGCCAGGCAGCTGAAAAAAGACATTGACCTGGAGAAAGCTGGAATACAGTTTGTCCCCTATGAGCAACTCAAGGTCACGTTTTTTAAGAGCACGTCTAAGAAAGCAAACACTCCTGAGCGTATAGTCACTATGGCCTCAGGagaagagctggaggaggaggaagagcgTGATGAAGGtggtgaagaggaggaggaaggtgATGAAGAGGCTCTTGATTATGACGGAGAGGAGGGAAGCCAGCAGGTGGAGAACATTAAAACCAGAGAGCGGCGGAGAGGCACTGAAATCAAGCTGCTGGGTCTGAGACTGGGTGAACAAACGGCTACTGTGGCGGCCAGACAGATCTCAGTGTCCTTGAAGTGCAACAGGTGTAAAGTGGACGCTGAGCTGACCCTAAATGGACAGGTGGCCTGTACTGCTCAGTGTGAGAAATGTGGAGCAGACATCAGAGCTGCCTTCAGGCCCAGTATGCTGCACCACTACAGTGATGTTTTAGGCTATCTGGACCTACACGCAGCTGTTCCTGTAGATCTTGTACTGCAGGACTCTCAGTTCAGTGTGGGCTGCCTCAACTGCAACAAGGAGGATATAATTCAGAATCTGACCTATGGCCAAAACTGGGAGCAAAACTGCCAACATTGTCATTTTAAACTCAGCATATTTGTGGAGGCGACACGTTTTCAATTCATTCAGCCGGAGACCAAAAATCAGACAGGTGCAGCTGGTCAATATCCTCGACGTTACAGGGACCCTGCAGTTCAGCAAGGAAAACCTCTTCCTGATAAAGGTGCCTGCAAGCATTTTAAACAAAGTCACCGGTGGCTAAGATTTCCATGCTGTGGTCGGGCATACCCGTGCGACGCATGCCATGATGAAGACCAGGACCATTTAATGGAGCTGGCCACCAGAATGATCTGCGGTTACTGTGCCAAAGAGCAGCCATACTGCAATGGTAAGCCGTGTGTTGGCTGTGGAGGCATGATGACAAGAGGAGCCTTTACAAGCTATTGGGAGGGCGGACAGGGCTGCAGGAACAAGATTAAGATGAACAGGAACGACCGGCACAAATATGCCAACACATCGAAAACAGTGCCAAAGAaagcacaaaaagaaaaaaagtaaagacACCAGAGGTTTTTCTCCTTTTTCTTGATCTAATTCAGATCATCAAGTCACGTTTTTTCCTCCTCGGATGATTTCACAGAGTTGTTTTTTTGCGATGTACaattcatttcaaaataaaacagcTGACAGGTTTTGCAATATTCAGCGCGAGGATCTGTGTCCactttttgtattgttttcatCTGTCTTTTTGCTTGCTGTTAGAAATCAACATTAATAATGTGTATAAATACAAGTGCaccttaatttgtaaattgttgAAATGAATAATTTCAACTTAAAATTTTGAACTTGCTAAAGGTTATAGTCATTAGGGatttttgtaacaattttaaaattaaaatcccTGGTAATCCCTTTTTCATAAAGCACCAatttaaaaagtttcaaattaTTGTTACTTTTATCCAAAATACATGTAAAGCGGTGCAATGAGCCGAATATGAAATGCAGAAGATTGCTGTTTTCCATCAGTCTAAATGAAATAAACTTgtgt
>TCONS_00026577
TTGACAGACAGCAACAGCTATAAGCACTGAAGTATTGGACAGTTTACATTGACTACAGGGTGTTTGTCGATCTAATGGAGTCAGAAAGTGCGGGTGTGGCGCAGGTTACTGAAAAAAGACATTGACCTGGAGAAAGCTGGAATACAGTTTGTCCCCTATGAGCAACTCAAGGTCACGTTTTTTAAGAGCACGTCTAAGAAAGCAAACACTCCTGAGCGTATAGTCACTATGGCCTCAGGagaagagctggaggaggaggaagagcgTGATGAAGGtggtgaagaggaggaggaaggtgATGAAGAGGCTCTTGATTATGACGGAGAGGAGGGAAGCCAGCAGGTGGAGAACATTAAAACCAGAGAGCGGCGGAGAGGCACTGAAATCAAGCTGCTGGGTCTGAGACTGGGTGAACAAACG
>TCONS_00026578
TTATGCTAACGCAAAGGTAAACGTAGTCATTGACAGACAGCAACAGCTATAAGCACTGAAGTATTGGACAGTTTACATTGACTACAGGGTGTTTGTCGATCTAATGGAGTCAGAAAGTGCGGGTGTGGCGCAGtcacTAGATCCTAAGGATGAACCAACAACTTCACCAGTGTCAGTTGACACTAAAAAGGAAAACTCAGGCCGTGATACTGAGATAAGCAGCAAAGATGTTTCCCAAAAGGCTGAACGGGTGCAGCAATTGTGTCGCTTCTACTCTCAGGGCAGGCGATGCTATTATGGAAAAAGGTGCCACTTTCTTCATCAGAGAGCTTCAGGTGCACCAAAAGATGGAGAAAATGGTACATCTCATAAGGAGAAAGAAGCAAAAGAGCCACAGCAACAGCTAAGTGAAAACAGCCAACCCACTACAGAAGATCTTCCACCTCCATCTAACCATAAACCTGctcctgtgaggcaacagagaGCCAGAAGACCATGTCGCTACTTCCTCTCAGGGTTTTGTGCTATGGAGGATCGATGTCGTTTTTTGCATCCACAAGAGTTTCCGCCGGTGGAGGACAAACATCAAGGTCCGAAAGAGAGGAGCAGCTTCAGGCCTAACGCTCCAGCTATGCGTCCCGCTAAAAGTCACGAGCAGGTCAAACTGGCTGAGCTCACAGAAGAAGTCTGCAAGCAGCTGCGAGAAACGGAGATCGCTCAGCTGATGAAGAGATTCCCCAAAGACAAGCTCATCATCCAGGAGCGAGAAGATGGACAGCTCACTTACTACAGAGTCACAGTTGAAGCCACCGATCCTGACTGG

Function

symbol description
si:dkey-24l11.2 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be active in nucleus.

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-208 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000068140 ENSDARG00000097612

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026575 False 1208 mRNA 0.41 6 26863139 26876559
TCONS_00026576 False 2731 mRNA 0.46 12 26863149 26894770
TCONS_00026577 False 420 processed_transcript 0.49 2 26880472 26894703
TCONS_00026578 True 823 mRNA 0.48 2 26891181 26894732

Neighbor

gene id symbol gene type direction distance location
XLOC_013463 ch25hl1.1 coding downstream 8180 26853891 ~ 26854959 (-)
XLOC_013462 znf592 coding downstream 51180 26800061 ~ 26811959 (-)
XLOC_013461 sec11a coding downstream 65416 26788083 ~ 26797723 (-)
XLOC_013460 nmba coding downstream 77278 26784968 ~ 26785861 (-)
XLOC_013459 kti12 coding downstream 81447 26770967 ~ 26781692 (-)
XLOC_013465 pstpip1a coding upstream 36186 26930956 ~ 26963473 (-)
XLOC_013466 rcn2 coding upstream 72644 26967414 ~ 26977940 (-)
XLOC_013467 NA coding upstream 160076 27054846 ~ 27066350 (-)
XLOC_013468 CR936464.1 coding upstream 242095 27136865 ~ 27136982 (-)
XLOC_013469 BX640463.3 coding upstream 412154 27306924 ~ 27307040 (-)
XLOC_013384 BX323829.1 misc downstream 7320908 19542102 ~ 19542231 (-)
XLOC_013456 CR352253.1 non-coding downstream 563296 26296165 ~ 26299843 (-)
XLOC_013455 dre-mir-184-1 non-coding downstream 659750 26203303 ~ 26203389 (-)
XLOC_013450 NA non-coding downstream 1117518 25697275 ~ 25745621 (-)
XLOC_013448 CR450716.1 non-coding downstream 1346508 25515893 ~ 25516631 (-)
XLOC_013445 NA non-coding downstream 1637703 25180539 ~ 25225436 (-)
XLOC_013471 BX640463.1 non-coding upstream 440171 27334941 ~ 27335059 (-)
XLOC_013472 NA non-coding upstream 463558 27358328 ~ 27362251 (-)

Expression


Co-expression Network