XLOC_013466 (rcn2)


Basic Information

Item Value
gene id XLOC_013466
gene name rcn2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26967414 ~ 26977940 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026580
AGCGGCAGTAACACATGTCCAGTAACGTTAGATGACCGAAGCGCAGAAGAGAGTCCAGAAGATGACCGATGTGCACCATGGCAACAAGCTCAGCTGAAAACTTGAGCAATCCACCTTTCAAAAGTTTAAAGATCAGATACACCTTTCTCTTATTGCTGGTGGCTTATGTATCAGGAGCTGTTGGAAACAGAGAGGATCATGTGTTCAAACATAACCATGAACATAATGCAAATACATTCCTTGGCTCTGAGGACAAAGATGAAATACAGAAACTCAGTCCATCTGAGCAGCGCAAGCGGCTAGTGGAGATAGTGAAGAAGATTGACACCAACTCTGATAAATATCTGACTCCAGAGGAGATCACAGTATGGATACAGAGGGTGTACAGAAAATATGCGCTGGACGATGCTGAGGAACGCTTTCCAGAGTTTGACTCCAACAATGATGGCTTGGTATCTTGGGATGAATATAATATGGTCATGCACGGTCATACTGTGGAAGTGGATGGAGACGCTGTACTTGAAGACCCAGAGGAAGAATCTCTCAGATTTCTCCATGCAAAGGAAAAAAGACGTTTTGACTTTGCCAACATGGATGGATCAGCTGGTCTGAATCTAACAGAGTTCCTTGCATTTACTCATCCATCTGAGGTGGACCACATGGCTGATTTTGCCATTGAAGATGTGCTTTCCGAATATGACTTGGATAAAGATGGATTCATCAGCTTGAGTGAATTCATTGGAGATCTCAGAACAAATGagcAGGACGAGCCATCGCAGTGGGAGATTGAAGAGACGGTGCGCTTTAAAGATCTCTATGACCAGGATCAAGATGGAAAACTCAACAGGGATGAACAGCTGCGCTGGGTCGCTCCAAACAGCTATGGCTCTGCAAGAGAAGAAgccCTTCATCTAATTAAGGAAATGGACCAAGACGGGGATAATCGGCTCTCAGAGACAGAGATTTTAAAAAACCAAGACACATTCATGCACAGTGAAGTGACAGATTATGGAAGACAGCTTCACGTGCCACATGATGAactgtaatagttttttttatatatataaatagttctTATGGTGCCATGAAGAAGGATTACTTTTagtgattattttatttagtgatttttttttttgattattaagtgttttgttttttttgttaagaAAACTGGGCCTTTAGTAAAGCgcaaaatgctaataaaagttGCCGTTAATTTAGACCATGTTAAAGTTGTAATTGTCATTGTTTTGAAAAGGCCCAATTTTTAGTACCAAAAAAGTTTTCGTTGGCGTTTGTGTTTATGCAAGTAGGACAAGTGTGGTGCTAATCTTCATGGGTGGGAACCTTTAAAGACAGACACTAACTATCATGAGCAGTGGTCTATAATTCTCCCATTGTAAATGAGTTAATTTATATGCTAAAGTTTCAATAGTCAAACATGGATTGGAATGCCCTGTTCCTGTAATTGGACTTAACCAACCACCATTTACAGTAAATGCATGATCCAATAAGATCCTTCATTTATGATAGGTAATACATGATAAAAAGCATAGTGTTGCAACTCTAGTTACATTGGATTGTTCCTACTTCCCAGAACACACAGTATCATTGCAAATAGTACTGTGGGCACTTTACTTAAGCCAATATAAAACATGAAATTTACATAGTGTAACAGCTCTGGTTACGTTGTATTGTTCCCATTTCTTATCACACACAGTATTGATACAAACAATCTAGAATTTTTTCATTAACTCGCTCCAAACATTGCAATTATTAGACATTGCTATTTTTTGTACAAAGTGAAGTTGCGTTTTAACAAACATTTTGCAACTGTTAAAATGACGTTCTGTCTAATTTATCCATTTTGACAAATTATACAAACATAAATCATTACATTATTTTCCCACAAAAGCAAAGCTGCAAAAGTAATTAGGATAATTTGAACTGTTGTAGACATGTACAGTGCatcctttttccacattttttatgttacagtcttattccaaaattgattcaattaatttatttccttaaaactCTACACACAGTATCCTGTAAtggcattgt

Function

symbol description
rcn2 Predicted to enable calcium ion binding activity. Predicted to be active in endoplasmic reticulum. Orthologous to human RCN2 (reticulocalbin 2).

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-050706-62 Predicted to enable calcium ion binding activity. Predicted to be active in endoplasmic reticulum. Orthologous to human RCN2 (reticulocalbin 2).

Ensembl:

ensembl_id ENSDARG00000039378

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026580 True 2070 mRNA 0.38 8 26967414 26977940

Neighbor

gene id symbol gene type direction distance location
XLOC_013465 pstpip1a coding downstream 3941 26930956 ~ 26963473 (-)
XLOC_013464 si:dkey-24l11.2 coding downstream 72644 26863139 ~ 26894770 (-)
XLOC_013463 ch25hl1.1 coding downstream 112455 26853891 ~ 26854959 (-)
XLOC_013462 znf592 coding downstream 155455 26800061 ~ 26811959 (-)
XLOC_013461 sec11a coding downstream 169691 26788083 ~ 26797723 (-)
XLOC_013467 NA coding upstream 76906 27054846 ~ 27066350 (-)
XLOC_013468 CR936464.1 coding upstream 158925 27136865 ~ 27136982 (-)
XLOC_013469 BX640463.3 coding upstream 328984 27306924 ~ 27307040 (-)
XLOC_013470 NA coding upstream 331464 27309404 ~ 27316599 (-)
XLOC_013471 BX640463.1 coding upstream 357001 27334941 ~ 27335059 (-)
XLOC_013384 BX323829.1 misc downstream 7425183 19542102 ~ 19542231 (-)
XLOC_013456 CR352253.1 non-coding downstream 667571 26296165 ~ 26299843 (-)
XLOC_013455 dre-mir-184-1 non-coding downstream 764025 26203303 ~ 26203389 (-)
XLOC_013450 NA non-coding downstream 1221793 25697275 ~ 25745621 (-)
XLOC_013448 CR450716.1 non-coding downstream 1450783 25515893 ~ 25516631 (-)
XLOC_013445 NA non-coding downstream 1741978 25180539 ~ 25225436 (-)
XLOC_013472 NA non-coding upstream 380388 27358328 ~ 27362251 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_00432775_00439564 RCN2 coding CI01000013 null 432775 ~ 439579 (+)