XLOC_013472


Basic Information

Item Value
gene id XLOC_013472
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 27358328 ~ 27362251 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027349
tttttattatctgtttatGGTTTTACATAGTTAAATATAtcagtatataaatatacaaatgagcCTTTATAAAAACACTCAATCATAAAATATTAGATTACGaagcaaaataaaacagaacTGAATACAGTTGCTCACTAAAGGTTGATTATGAAATGCACAATAGAAACAACTGAATAATTCATCAGCATGGGAGAAGTCAGCTTGAATATGTCAATACAGGCATTTATTGACTTTACAAGAGGTAAATCACTTCACTGTAAACTGTTTTTCGCTCatcatttttctttattaactgtGAAATTTGTATTGACAGATTAGAGTGATGATTCTTGGAACGGACTACTCGGCTTGTCTTTCACCTAATGGATTCCAGTTATTTACAAAACATTCAAAAAGAGAACAGTTTTAGTAACAGCACATGCTTTTCCAAGAAATATCTCATCATAGGTAATTCATGAAGTTATGACAGAAAACAGTGCAGCATGGAAAATGCATTTGTGCTGTTTAACATAACAGCAGATAAGAATGAAAAGAACATTGAAAAGAAACATCTGAATTTTATCCCATTAATTTTGCCACACAATTCGGtctattttttgttaaatttcttAAATATGAACTGAATGTCAACATTTCCTAAAATCTTTGTTGGATATTGAACAATACTGCCACCTAGAGTTAAACTCGCATACAATCGACAGCACATATTTTAAAGTCAAGTCAGAAAATGGCTTGAGATACTggcaaaaaacatatataaaaaagaaaagaaaagactgAACTTATTATTtagtgtttattattaaaatcacactAGACTGAAATAAGACTATAAGGCTTCAGAAAGTCTCTTTAGAAAATAAACTATCATTTGGAATGTTAAAAATGCTtagattttatataataatacttACATAAAATAAGGGGCATGATAAATATGTTAAGTGTTCACGCAAATACAATGTATTTTGATGGTCtacttaatataaaaatacaaaatagatTTCTGaagttacaaaacaaaacaaaattgagAAATTGTTGGAAACGTTTCCTAGATATTTTTTAGACAATCTACCCTTCCAGAcaatatataaatgtacatattaaagcatacatttaaaataaaaactgagattaaaaagacttaaatatgCCCATTAAAATAAgctgatattaaaaaataaacccaATGCCACTTGAACTCCATTActattggatttatttatttatttttttgtggaatGTGAAAGTGATTTGTGttgtttaaaaagtattaaaatgttggtaacattttacaatgagGTCTCATCGGTTATTGCAACAACAaaccaaaaatgttatatatatttttataattattttttggtCACTCAAAAGAAAATGTTCAGAGCATTAACAAATGCTAAAATGTGTTAGTAAAAGAAGCTCAAATTACCACTGACTAAGattaaaaaatgctgtaaatacaaaaagaagaaattaaaataacttattattattattgataacaaTTCTAAAGTATTGCAAACACTGCCTTCGtattaaagtgttagttcatcccaaaataaaattgtcatccattttattagaaatgtgttcattttcaaaacaaaGATGAAGATATTTTGCAAACATCTCTGAACGTTGATCCATCCAATACTTTCAAACTGCTTcaatacattcaaaataaatctattaataaagctggggtccattcttcgtacctcgcttaaatgatctaagatgatttggcagatcctggatctttttatctcgataactgatctctcgctaatttggttcttcaaacaagttcgcgaatcagattagaatgtctggataaactgatctgagatcgctgtatgtgttgtaaaggacagatctatcgatcctcgaaatcatgatcagcaatgcaatggttggctgacggcacagcagcgtaatgacatcatctgattaatattcaattatccatgtgagcaaaattacatcaaattagcagtaaatggtttgttaaatatgacacgcaataaccttccacatttgttgtgagctgcaggctttacactttcatgtgtcaagtgtattcatcatgtatttcaatgcaaatcaatgtatttagatagattttcattattatagtagctgtttttttaatcgggttaaagaataactggttgtttacaaaagcattttgatattggtaaaggcgtctgcaacttttgtgaagcattaaatcactggcatattaactatcaaaaaatgtttatgactgcataaatgtattattgcttttttgtttgtttttttaaagtcatatattgtgcatttctattatacacagtTTGTAcaaaagcgatctaaaaagttcatatcaataagttttctctgcaccaccaggtggcagtctttgtactttcatttcgagggtgcagattgtataagttttatttatttattttattaataactataactttatatatttagttaaaaaatatttaccattttcccaagtgtatataactactactgtaagaaaatagcagaattcggaacatactttctgtattatctttgcttaaactgagctgatctaatcctgttaaaatgaattgaacctgctcccgatcaggtttgacctagcagaactgttgctatgacaacaactctcggatcagctttaaagaacgaaacgatcctggatcgtgtcaaatcgtcaatatccaaatccaacttgagtaatccacgtacgaagaacgaaccTCTGTTTTATGCCAGTCTTTTGAAGAGAcatgttttattgattattttcacGAAACTTTAGCTTCCATGACCACTTTATTCATTGTAAACTttgatcaacgtttatatgtgtGGTGAAAAAAAGCCTTAAATTAAAACAATCCTCATACAAAACTATtagaattcatttaaaaaatgtcttataaCACTGGAAGTGATGATACAAATATTCttgatttgatgttttatttgacCTTTGTCAGGAGACAAACTATttcaatgccttcctcagtgtgtaaAGTAAAAAAGAACACAATTGTGTCTGTTTCCTGATGAATGTCAAATAAAACGTGAAAACAAGAAGACTAGTATGACTGCGGATCATTAATTCCACCCCTTTCTATGGCATCAGAGCCCAGAACCTGAGGGAAGATGTTGAATCGTGCCTCATGTTCGCTGTAGTCCTGCTGGGTCTCGCTGTACTGTACCATCCTATTCTCGTTGGACAGCAGCAGCTTTGGATGGACTGTATCAGGATCTAGAGTT

Function

GO:

id name namespace
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0008201 heparin binding molecular_function
GO:0030274 LIM domain binding molecular_function
GO:0001085 RNA polymerase II transcription factor binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027349 True 3297 lncRNA 0.31 2 27358328 27362251

Neighbor

gene id symbol gene type direction distance location
XLOC_013471 BX640463.1 coding downstream 23269 27334941 ~ 27335059 (-)
XLOC_013470 NA coding downstream 41729 27309404 ~ 27316599 (-)
XLOC_013469 BX640463.3 coding downstream 51288 27306924 ~ 27307040 (-)
XLOC_013468 CR936464.1 coding downstream 221346 27136865 ~ 27136982 (-)
XLOC_013467 NA coding downstream 291978 27054846 ~ 27066350 (-)
XLOC_013473 BX005470.1 coding upstream 228191 27590442 ~ 27628784 (-)
XLOC_013474 NA coding upstream 319050 27681301 ~ 27682853 (-)
XLOC_013475 NA coding upstream 440300 27802551 ~ 27819952 (-)
XLOC_013476 iqcg coding upstream 481525 27843776 ~ 27897217 (-)
XLOC_013477 NA coding upstream 842093 28204344 ~ 28221748 (-)
XLOC_013384 BX323829.1 misc downstream 7816097 19542102 ~ 19542231 (-)
XLOC_013456 CR352253.1 non-coding downstream 1058485 26296165 ~ 26299843 (-)
XLOC_013478 NA non-coding upstream 958479 28320730 ~ 28324155 (-)
XLOC_013479 NA non-coding upstream 1239342 28601593 ~ 28603115 (-)

Expression


Co-expression Network