CI01000339_04955181_04994715


Basic Information

Item Value
gene id CI01000339_04955181_04994715
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 4954865 ~ 4994835 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_04955181_04994715.mRNA
AGAGATGAGAGCAGTTCAGGGAGGTGGTGGGACTGATTTACATGGCTGGAGCCAATCCACAAGAGACCTGCACTGGAGTCAGTGAGATCTTTTATTGGACTTGTTTGGCTTGTACAGGCAATGAACGAAGAATTACCTCTCCAGCAGGTGTTGAAAGGTTCTAAGAAACTCTCCATGTCAGTCTGTTCTATGGGACGGATCCCAGGTGGTTATGTGACCAATCACGTGTACACATGGGTGGACCCTCAGGGCCGCAGTGTGTCCCCACCCCCAGACTTGGTGGACCAGCATGGCTCAGGAGGAAGACACTCGGACATCCAGCAACTTGGACACACACACATACGGCACGAGGATGCTGAGAAAAAGGTGAACATCTCACTGGATGACGGGCGATCATTGGGTCTGATGATCCGTGGGGGTGCTGAGTATGCTCTGGGCATCTATATCACCGGAGTGGACCAAGGCTCTGCTGCAGAGTACAGTGGACTAAAGAATTTATTCACCATCAGAATGGTAGTGATAGAAGATATTGTGTATCTGGAGCGAAATGACAAGGATCACTCATCTGAAGACGTAAATGTGAAGATTTTGACAGGGATGACAGAATGCTCTTTCAAACAGGTTCCTGTGGTAGGGGATCAGATTCTGGAGGTCAATGGACGTAGTTTCCGGAGCATTTGTCATGATGAGGCCGTGCAAATCTTGAAGAATTCCCACCACATGCTGATGACCATAAAGGACGTGGGGCGGCTGCCTCATGCACGCACTGTGGTGGATGAGACCAAATGGATCCCTAGTGCACAGATCGCTGAGAGCTCAGCCAATAGCAACACCCAGAGTGTTCTATCTGTTGATGTCGGAGCAGGAAGTTCAGGAAAGGAGCTTGTGTGTCCTTATACCTTCTCTTGTAACACTCTTCTATTCCATTTCCCATTCCGTGTATTCCAAGACCTGTCAGAGGACTTTGGCACAAGTGCAGGAATTCTGAGACCCATTTATGTTCAAGCAATAGCAGCACCTGGAGATATAGAGGCAGGGAGAGTGAGAGAGATGAAGCATGTTGACAAATACTGGAGTTATTGTGATTCAGTCTGTTGTAAAGGTGTTGTACCAGCAGTCGGAGTGGTGCGCACAGGAGCGTGGAACTCTCTGGAAGAACAGGCGTTCATGCTTCTGACAGAAACAGAGAGACAGACCATGAGCTATTACATTCAAGAGTACCAGCGCGCACACATCGGGGTAGAGCCACTGGCCATGGCCTTGTTTGAACTGTTCAACACACATGCCAAGCTGTCCTTGCTGGCTGAGGTGCGGACACTGATTGCTCCGCATGACCTGGAGCGATTCGATGGGCAGAGTGAGTGCAGGTTGGATGGGAGTTTGATGCCACTTGAGAGTCTAAATTCTCTTCCTGACGTTGCTCTGGATAAAGTGCAGCCGTCATCTGAGTCACCCCCCTCGTTCAAGCCTCCCCCTCCACCTATTCGACATGCCAGCCCAAAAATTCAAAGCAAACGACCTTCGTCTAAGCTGTCCCAGACGAACCTGCTCTTTACCGCCCCCTGTAGGCGGCACCAGGAAAACCACACCCAACATCATTCGCACTCGCCCTGCTCTACTCACAACTCTCCGTGTACCATCCACCACACCACTTCCACCTGCTCTGTCCATCACACTCCTCCACCCTGCTCTCACCATCACAGCTCTCCACGATCATCATCCTATCGCGCTAGCCCTTCCTCCGGACCACCGTGTAGAGATCTGGTTCAGTTTCTGATGAGCAGGCATGCAGCGGTGCTCTCCCCACACCCAGAGTCTCCTAATCGTTCTCAAGAGGGCACTCCAATGATCTCTCCTCGCTCCTCTCCGTCCCTTTCGCCTTCACTGCTAATGCCTGCACCGCCTCCCTGTAGCCCAGAGAAGCTCGAGGGCTCCCCATCTGCACACAGCTGCGGTGCCAGCCAGAACAGCCCACTACACCCTGAGCCGGAGATGGCAGAGGAAAGGCCCCAGCCCCAGCTACGAGGAGCCACGCTGTCCCAGCTGTCAGACAGCGGACAGACTCTGAGCGAGGACAGTGGTGTGGATATCGCAGAGGCTGGAGGGTTGAGTAAGGACAGCAGCCCGCGACCAGGTAAACCTCCCTTCCTGCAGGTCATAGGTGACACACGCAGAGCGGAAGGACTCGCACAGGCCTCCACAAAACAGATGGGAATAATGGAGCCTACACTGGTACGGGTGCCCAAGTGTGCCAGTACACTGGGTATTGCTGTTGAAGGGGGTGCCAACACCAGACAGCCTCTGCCACGCATTGCAACCATACAGAAGGGGGGCTCTGTGCATATCTGTGGGCAGTTACGGGTGGGTCAGGTGATTCTGGAGGTGAATGGCGTGTCACTTAAAGGAATGGAGCACCGGGATGCGACTCAAGTCATTGCGGAGGCTTTTAAGACCAAAGACAAAGACCATGTCGACTTTTTGATCGCCGAGTTCAACTCTGCTCTGTAGAAGTAGTCCCTCGAGAGTTTCACTTGATGGCACTGCAAAGATCTGGCACTTTACGTCACATCCGCACAGAGGGGCCGAATGAGTCATGCTTGTCATATCTGAGTCACAATTAGCTTAGACTTCAAAAGCTTCAACACACCCACCTTACGTCTGTGTTCTTGCGACCAGCCATCACACGCTTACTGTATTACCACGGTATGTTCCAGTGGATGATCTGCTGAGCCAAAACTGATGGTGAAATGTTTGACAGGACAAAATCAGGGTTTTGTCAAGTCTGTCAAATCTGTGCCACCTTGTATATGATCTGTTCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_04955181_04994715.mRNA True 2824 mRNA 0.52 16 4954865 4994835

Neighbor

gene id symbol gene type direction distance location
CI01000339_04915744_04930094 FAM129BB coding downstream 24771 4915744 ~ 4930094 (-)
CI01000339_04889425_04898489 NPDC1B coding downstream 56376 4889200 ~ 4898489 (-)
CI01000339_04841245_04848286 TRAF2A coding downstream 106579 4840259 ~ 4848286 (-)
CI01000339_04773830_04777717 NA coding downstream 176843 4772981 ~ 4778022 (-)
CI01000339_04742986_04767624 NA coding downstream 184571 4742828 ~ 4770294 (-)
CI01000339_05009812_05012651 NA coding upstream 14933 5009768 ~ 5014163 (-)
CI01000339_05022538_05028211 NA coding upstream 27703 5022538 ~ 5028211 (-)
CI01000339_05038610_05044559 MAN1B1, MAN1B1B coding upstream 43456 5038291 ~ 5044559 (-)
CI01000339_05046629_05063011 NA coding upstream 51042 5045877 ~ 5063011 (-)
CI01000339_05096677_05210034 CACNA1BA coding upstream 101842 5096677 ~ 5210034 (-)
G483614 NA non-coding downstream 44052 4904837 ~ 4910813 (-)
G483480 NA non-coding downstream 73122 4880528 ~ 4881743 (-)
G483610 NA non-coding downstream 75310 4879340 ~ 4879555 (-)
G483609 NA non-coding downstream 75614 4878706 ~ 4879251 (-)
G483493 NA non-coding downstream 120801 4827554 ~ 4834064 (-)
G484405 NA non-coding upstream 182318 5177153 ~ 5177568 (-)
CI01000339_05286494_05309122 GRIN1 non-coding upstream 200158 5286050 ~ 5309342 (-)
CI01000339_05254264_05259467 NA non-coding upstream 261136 5254264 ~ 5259654 (-)
G484436 NA non-coding upstream 366081 5360916 ~ 5361470 (-)
G484452 NA non-coding upstream 394934 5389769 ~ 5389979 (-)
G483481 NA other downstream 101418 4851757 ~ 4853447 (-)
G483512 NA other downstream 336140 4618112 ~ 4618725 (-)
G483509 NA other downstream 341547 4612852 ~ 4613318 (-)
G483285 NA other downstream 784363 4125258 ~ 4170502 (-)
G483199 NA other downstream 1176314 3777891 ~ 3778551 (-)
G484394 NA other upstream 261732 5274086 ~ 5274270 (-)
G484702 NA other upstream 1028897 6021828 ~ 6024822 (-)
G484645 NA other upstream 1259496 6254331 ~ 6256112 (-)
G484826 NA other upstream 2006058 7000893 ~ 7004773 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020216 whrn,dfnb31a,LOC107661489,LOC107692282 coding CM030127.1 CM030127.1 13368648 ~ 13387997 (-)