XLOC_013475


Basic Information

Item Value
gene id XLOC_013475
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 27802551 ~ 27819952 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027351
CCAGCAATGTGATAAAACTTTATTGAAAAGTCAAATTTGATGTATTATAAACTTATTCTataactatatacaatatatacagtatgtacatacgtGCCCTGATCCTTCATCTGGCACTAGGATGTCTCAGTGCCTGGCCTTCTTTCTTCGGGGCTCTCTGGGCAGTGGCTCTTTGCTGATGTCCACCAAGATTTGAGGAGCGACGCTGGACCCGGATCTGATCTCTGTGATGAACACACGTCCATCAGGCTGCTCGGTCTCCAGCAGTGCAGGCCGGTCCAGcttctcccacagccgctgcttgatctccaGGCCCTGCTCTAGGTTGTACCGACCACGCCTCTTCTTGGTGGAGCCCATCACACTGTGGTAGATTTGCTGATAGTCTTGCACGCTCCGGCCATGGATGGAGAGAGGCTCCTCCTTCGGACACTCACCCACTGATGAGACTGAGGCTGACAGACGGAGGTCAGGAATAGCTGCCGCGTTTCTCAGGTGTTTCTCCAGCAGAGAAGTGTCCGACAGGCTGCTGGAGGTGTCCGGCCTGACCGCCACTGCCCGCTCCTCAACGGTAGAGACGCTCTCCAACAGGAAGTCCTTCTTCAGGTGTGCTGGAAGAGTCCTGGTCCTGCTTGAGCGTCGCAGCTGCATCACGAACAACTTTAAAACAACTTCCCAAAGTCGACAAACTTATGAAGCTCAGCCAACAGGAGCAGCCGAGGAAACCCAGCAGGAACAGCATGCCTCCCATGGCCAGGATGATGTAGACGCCCGTGAAGAGAAGAGGGTTTGCTGCCACAATCTCCCTAAATCCTGTGGGGTCCACAACCACCCAAACCCCCACACCGAGGAGGAACGAGCCACCCAGCTGAGGAGATGGAAAGAGAAAAGTCATTAAATCTTGCTATTTTTGTGTCAGTTTCATTTTGGTACATAAAAACATTGAAT
>TCONS_00027352
CGTCCATCAGGCTGCTCGGTCTCCAGCAGTGCAGGCCGGTCCAGcttctcccacagccgctgcttgatctccaGGCCCTGCTCTAGGTTGTACCGACCACGCCTCTTCTTGGTGGAGCCCATCACACTGTGGTAGATTTGCTGATAGTCTTGCACGCTCCGGCCATGGATGGAGAGAGGCTCCTCCTTCGGACACTCACCCACTGATGAGACTGAGGCTGACAGACGGAGGTCAGGAATAGCTGCCGCGTTTCTCAGGTGTTTCTCCAGCAGAGAAGTGTCCGACAGGCTGCTGGAGGTGTCCGGCCTGACCGCCACTGCCCGCTCCTCAACGGTAGAGACGCTCTCCAACAGGAAGTCCTTCTTCAGGTGTGCTGGAAGAGTCCTGGTCCTGCTTGAGCGTCGCAGCTGCATCACGAACAACTTTAAAACAACTTCCCAAAGTCGACAAACTTATGAAGCTCAGCCAACAGGAGAGTTTTCATCAATCGAGCAGCCGaacaaggctgatttatacattCAGCTCCACAGCACGATCCTCCACCATCAGGCCTGCGCTGCGCTCGACTGTGGGATCCTGATTTCCAAAGAAAATGCAAAATCTACTTTCATCAGAGAACATACTTTGGAGCATTTAGTAGTAGTACAGTTTTTAGCCCAGGTGAGACTCTTTTGATGCTGTCTGTTGTTCAAGAGTGGCTTGACGGAAGGAATGCAACACCTGAAACCCATGTCTTTTGTACAACTGTCAAATCAGCCATCTTCCTCATGATTGTGTATCATACTAGACTGAGAGACCATTTAAAGGCATTTGCAGATGTTTGAGTTAATTAGCTGATTAGAGGGTGACATCTGGGGcccgtttcagaaaggaggttaagactcagagtattttaaccctaaTATGAGAGGAACTCTGGGCtctccgtttcaaaatggcaggtttgttaaactcgagaaactAACTCTGtaaacctaacctggtcaggagcaggttttattctctaaactctgccAGTCTCCTgcccttttttaaagacgaatTGGTATTTCTCACCTAAGTCGtatttccacccacctattttaatgctcattttggataagcgcataaaaacgattgatggaaatgtcatgatgcacataacttttgaaaatatgcataaaactgAG
>TCONS_00026972
ATAAACTTATTCTataactatatacaatatatacagtatgtacatacgtGCCCTGATCCTTCATCTGGCACTAGGATGTCTCAGTGCCTGGCCTTCTTTCTTCGGGGCTCTCTGGGCAGTGGCTCTTTGCTGATGTCCACCAAGATTTGAGGAGCGACGCTGGACCCGGATCTGATCTCTGTGATGAACACACGTCCATCAGGCTGCTCGGTCTCCAGCAGTGCAGGCCGGTCCAGcttctcccacagccgctgcttgatctccaGGCCCTGCTCTAGGTTGTACCGACCACGCCTCTTCTTGGTGGAGCCCATCACACTGTGGTAGATTTGCTGATAGTCTTGCACGCTCCGGCCATGGATGGAGAGAGGCTCCTCCTTCGGACACTCACCCACTGATGAGACTGAGGCTGACAGACGGAGGTCAGGAATAGCTGCCGCGTTTCTCAGGTGTTTCTCCAGCAGAGAAGTGTCCGACAGGCTGCTGGAGGTGTCCGGCCTGACCGCCACTGCCCGCTCCTCAACGGTAGAGACGCTCTCCAACAGGAAGTCCTTCTTCAGGTGTGCTGGAAGAGTCCTGGTCCTGCTTGAGCGTCGCAGCTGCATCACGAACAACTTTAAAACAACTTCCCAAAGTCGACAAACTTATGAAGCTCAGCCAACAGGAGAGTTTTCATCAATCGAGCAGCCGaacaaggctgatttatacattCAGCTCCACAGCACGATCCTCCACCATCAGGCCTGCGCTGCGCTCGGTAAAGTTTGCTGGTGACTAGTACTCCATCCGTACACACACAACCTTACTTTTGCTCATGTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027351 False 948 lncRNA 0.52 2 27802551 27819952
TCONS_00027352 False 1169 lncRNA 0.48 3 27817198 27819714
TCONS_00026972 True 819 lncRNA 0.53 2 27818134 27819906

Neighbor

gene id symbol gene type direction distance location
XLOC_013474 NA coding downstream 119698 27681301 ~ 27682853 (-)
XLOC_013473 BX005470.1 coding downstream 173767 27590442 ~ 27628784 (-)
XLOC_013472 NA coding downstream 440300 27358328 ~ 27362251 (-)
XLOC_013471 BX640463.1 coding downstream 467492 27334941 ~ 27335059 (-)
XLOC_013470 NA coding downstream 485952 27309404 ~ 27316599 (-)
XLOC_013476 iqcg coding upstream 23824 27843776 ~ 27897217 (-)
XLOC_013477 NA coding upstream 384392 28204344 ~ 28221748 (-)
XLOC_013478 NA coding upstream 500778 28320730 ~ 28324155 (-)
XLOC_013479 NA coding upstream 781641 28601593 ~ 28603115 (-)
XLOC_013480 CR388161.1 coding upstream 975607 28795559 ~ 28795675 (-)
XLOC_013384 BX323829.1 misc downstream 8260320 19542102 ~ 19542231 (-)
XLOC_013469 BX640463.3 non-coding downstream 495511 27306924 ~ 27307040 (-)
XLOC_013468 CR936464.1 non-coding downstream 665569 27136865 ~ 27136982 (-)
XLOC_013482 LO018677.1 non-coding upstream 1265106 29085058 ~ 29085174 (-)

Expression


Co-expression Network