CI01000339_05522752_05535461


Basic Information

Item Value
gene id CI01000339_05522752_05535461
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 5522733 ~ 5535665 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_05522752_05535461.mRNA
ACAAACACGTCCTGACATGAAGGAAGAACTCATACAGCACCTACAACCACGAAAAAGAAGCCAAAACGGCATCCCTAGTTCAACAAGAGCAAATCGCCAAGTCATCGACAGACAACATTGAAAAAGCCCCTGTCCCCTCTTTCGCCCTCCTGTGCGGCCGGTCCTATCCGTATTTACCGTGGAAAAAAATGAAAATCCTCAAAAATGGGTCAGAAAAGGTTCCGTAGAAGACTGAGAAGAGAAGGCGGAAAGGTCGAATGCGTCAGCGTCCAATCCACGCCACGTAGTGAGAGAGAAAAAGAGATAGACTTTTTTTCAACCTCATCAAAATGGCAGAGACAGAAAGTTACAAGCAAGAGAGAGAAAGAGAGCGAACGAACGGGAGCACAGCTCACTGTCCTGTTCTGGAAAAAGCCACGGGCAGCGATTCTTTGTTGTAATTGGTGCATGATCACTTCTATCATTCTACCCTTTCCATCCATCATCGAATGTGGAGATACTGTCACGCTGAAGCAACGGCAGATATACAGCATGTCACTGTCTTCCATTCCCAGGATGCATTGCCACAGGCAGAACATGAGTCAGTGGCTGAAGATTACCATTGTAGAAAAGACTACTAATCACATTGTCATTTCAGTACCTTCAGTACTTCAGTACACTGTTTTGGTCAATAAATGGTGGTTGCTTTTCACGCTGTGCCATGTAACTGACAAGAGATTGGATCAGCAGCAAAGATACAGCACTGATCTGATTAGAGCCAGCAGGGGCTTGAGTTCAGCTCAGATTTGGAGAGAAAAAGAGTTCAGGAATGCTCATTGTGTGAGATCGTGGCCCCTTTCCTGTGCTCAGCTCGGGTTGTCTGAGGACACGGTGAACCAGGCCACCCGATATGAAGGAGAGGGCCCTGCTAAGGGGCCTAGATGCCTGAGCGGTGAGGAGCCCATTCTCTTTTATCAGGCTCTGACAGTTTTCCTTTTCAATAAAACCCATTTAGACACCCAGCACTGGCCCAACGTCCACCGTAACAATGCAGCTACCTTCTTAAGTGAAACTGCTTCTTTTGCGAAGATCCAGGACCAGATGCCTCAATGCAAATCTTAACTTTAGGTAGATAAATAAA
>TU555982
TGGTGCATGATCACTTCTATCATTCTACCCTTTCCATCCATCATCGAATGTGGAGATACTGTCACGCTGAAGCAACGGCAGGTAAAATGAATAAAAGAACGAAAATATTTTATTGATAAAGTCGCTTGAGCTTAAATGTCTTGTTGTGTATGTGTGTGTGACAGAGAGACACACACTGCACTGTCCATAGATCAGTGTTTTTTTCTGTTTAATGCCAAAGACCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_05522752_05535461.mRNA False 1120 mRNA 0.46 8 5522733 5535665
TU555982 True 225 lncRNA 0.40 1 5531119 5531343

Neighbor

gene id symbol gene type direction distance location
CI01000339_05387768_05396589 CFAP77 coding downstream 126144 5387695 ~ 5396589 (-)
CI01000339_05381662_05386593 BARHL1, BARHL1A coding downstream 136140 5381290 ~ 5386593 (-)
CI01000339_05329216_05330546 NA coding downstream 192187 5329140 ~ 5330546 (-)
CI01000339_05286494_05309122 GRIN1 coding downstream 213391 5286050 ~ 5309342 (-)
CI01000339_05264265_05270065 ENTPD2A.2, ENTPD2A.1, ENTPD2 coding downstream 252668 5264265 ~ 5270104 (-)
CI01000339_05584421_05594083 BCO2A, BCO2 coding upstream 48474 5584139 ~ 5594083 (-)
CI01000339_05595943_05596416 NA coding upstream 59664 5595329 ~ 5596416 (-)
CI01000339_05624136_05625750 NA coding upstream 88055 5623720 ~ 5625750 (-)
CI01000339_05627087_05634310 ZBTB44 coding upstream 91422 5627087 ~ 5634365 (-)
CI01000339_05639652_05652636 ADAMTS8A coding upstream 102294 5637959 ~ 5652830 (-)
G484467 NA non-coding downstream 35828 5483407 ~ 5486905 (-)
G484460 NA non-coding downstream 96875 5424904 ~ 5425858 (-)
G484437 NA non-coding downstream 106968 5414700 ~ 5415765 (-)
G484459 NA non-coding downstream 109965 5412472 ~ 5412768 (-)
G484458 NA non-coding downstream 117187 5405330 ~ 5405546 (-)
G484492 NA non-coding upstream 2491 5538156 ~ 5543421 (-)
G484496 NA non-coding upstream 8224 5543889 ~ 5546808 (-)
G484526 NA non-coding upstream 12100 5547765 ~ 5548133 (-)
G484530 NA non-coding upstream 18049 5553714 ~ 5554916 (-)
G484532 NA non-coding upstream 24944 5560609 ~ 5561809 (-)
G484394 NA other downstream 248463 5274086 ~ 5274270 (-)
G483481 NA other downstream 669286 4851757 ~ 4853447 (-)
G483512 NA other downstream 904008 4618112 ~ 4618725 (-)
G483509 NA other downstream 909415 4612852 ~ 4613318 (-)
G483285 NA other downstream 1352231 4125258 ~ 4170502 (-)
G484702 NA other upstream 488067 6021828 ~ 6024822 (-)
G484645 NA other upstream 718666 6254331 ~ 6256112 (-)
G484826 NA other upstream 1465228 7000893 ~ 7004773 (-)

Expression


Co-expression Network