CI01000339_05808414_05810066


Basic Information

Item Value
gene id CI01000339_05808414_05810066
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 5807441 ~ 5810651 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_05808414_05810066.mRNA
AAATCCTTCCCTGAACTCACCAAGTCCACATAGTCAAACCAGCTACTGAATTGCAAGTTCCATGTCATTAGTTCAATATAGCTAAGGCGAAAAGAAAAAAATAAGTGTTTTCTCTTTATCTGTATACTTCACAGTAGTCTCTTTTTCATGGTTATCCTCATTTGTATAGCTTTCCCCATAAGCCTTATGGTAATGGAATGACACTGAGATGTACTGTAGGAAATGGGCTTCCATTCGAACCATTGTTTCCTCATATTTGACTCGACTCTGCAGCATGACTGTTTGTTTAGTCTGTTTGTATGCATGCACAAGTGTGTGTTTGTTTGAGGCTTTGAGGGCATGTGTTTGTGTGGTAGTCTTCACAAAAAAAAAAAGTCTTTCAAGGAATGTGTATCAATCAAATTCAGTTCAAAATTGCAATTTCCTACAGTATGTTTTTGTGTGTTAGTCTGTCTCAGTGTGTAGTCTACTAGAGTAAACACATCATGCTGGCTGCTATTTCTAGAGAGGAGGCACGCGACCCTGGAGACCGGTTTAGCTCCCCGCTGTCAATCACACAGGTGACATGCGAAGAGCTCAGAGAACATGTGCACCGCACGGCAGAGAAATGGAAAAATAAACAGATATGTTCAGCCAGCTGTTAGCAGAACACTGGCCCCTCCTGACCCACCACTTTTGAGCTCTTCTCATGCACTTGTGGAGTTTATTGTGTTTCCTTTTCCTGATCTTAGAGTGATCTTTTGTGAGTTAATTACAGACATGCTTGGCTCTGAGAAATTCAGGCTAGTGTGGGAGCATGTGCTGGAATCTCTACAGGACCCCAGTATCAACAGGCACTTGGTTTACTGTATCTTTGATCTTCTGCTGGAGTTCCTTGTTCCAGAATTTTCCGAGGAGACGTTCCAGAGGTCTTTACTTCAGAGTCTCCCTGGGGATATAGAGAGAACACCATCCTCATAAGGACACTATGTTTCTTTTCTTCCATCTTTAGGAATGCTGAGGACATTTGGATGTGTTTTTATCAGTCTGGCTTATCAGTTTGGCAGGCTTTGTATACAGCTGCTTTTGTCTCACAATGTTCATCTGATGCACTAACTTTCCTGTCAGAAACACAAACAACTCAAATTTTCATTTGTCAAATATAAGATTAATCATTGCTGGGAATAGACCTCTTTTCTAATTTATTAATTTGTAGTCGCTGCTCTGTGCGGTTTGTAGACAAAACATGAAGAGGGGTAAATCAAAATCTCTTCTTGGCAAACTGGTTGTTTGGATATTATTGTCCTCCCGTGACTCTTTGTGGATGTTGAACAAACAGTGGATGTACATTGTTGGAATGTCTAAAAGTATTAAAACATTTAGGATATAATATGTTTCCTATACACTACCATTCAAAAGTTCAAGGTCAATACTATATATATATATATATATATATATATATATATATATTATTAAATCGTAAATAAAACATTTATTCAGCAAGGATGAAATTAAAAAAGACATTTACAATGTTATAAAAGATTTCTATTTCAAATAAATGCTGTTCTTGTGAACTTTCTATTTATCAAAGAATCCTTTAAAAAAGCATTATGGTCTCCACAAAAATATTAAGCAGCATAACCATTGATAATACTAAGAAATGTTTCTTGAGCACCAAAACAGCTTTTAAATGATTAAATTTAAATGATTTCTGAAGGATCATGTGACAATTCAGCTTTACCATCATTGGAATAAATTACATAAAATAGAAAACATAAATTGTAATAATATTTCACAGTTTGACTTTTTACTGTTTTTGATCAAACACATGCAGCCTTGTTGAGCGTAAGTGACTTTCAAAAACATTAAAACATTTTACTGACCCCAAACTCTTGAACGGTATGTTTATGTTTTAAGTTTTTTTTAAATATATTGTTCCATTAAAATGAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_05808414_05810066.mRNA True 1933 mRNA 0.36 3 5807441 5810651

Neighbor

gene id symbol gene type direction distance location
CI01000339_05639652_05652636 ADAMTS8A coding downstream 154611 5637959 ~ 5652830 (-)
CI01000339_05627087_05634310 ZBTB44 coding downstream 173076 5627087 ~ 5634365 (-)
CI01000339_05624136_05625750 NA coding downstream 181691 5623720 ~ 5625750 (-)
CI01000339_05595943_05596416 NA coding downstream 211025 5595329 ~ 5596416 (-)
CI01000339_05584421_05594083 BCO2A, BCO2 coding downstream 213358 5584139 ~ 5594083 (-)
CI01000339_05821180_05830949 SNX19A coding upstream 10226 5820877 ~ 5830949 (-)
CI01000339_05832439_05832960 NA coding upstream 21686 5832337 ~ 5833111 (-)
CI01000339_05853559_05857997 ATF5A coding upstream 42644 5853295 ~ 5857997 (-)
CI01000339_05863897_05897316 PHLDB1A coding upstream 52188 5862839 ~ 5897316 (-)
CI01000339_05917956_05923087 ARCN1 coding upstream 107249 5917900 ~ 5924012 (-)
G484587 NA non-coding downstream 57486 5749380 ~ 5749955 (-)
G484544 NA non-coding downstream 228279 5578906 ~ 5579162 (-)
G484541 NA non-coding downstream 232877 5574126 ~ 5574564 (-)
G484537 NA non-coding downstream 241032 5566086 ~ 5566409 (-)
G484536 NA non-coding downstream 241781 5565368 ~ 5565660 (-)
G484683 NA non-coding upstream 26175 5836826 ~ 5837063 (-)
G484684 NA non-coding upstream 26922 5837573 ~ 5837789 (-)
G484659 NA non-coding upstream 48157 5858808 ~ 5861203 (-)
G484702 NA non-coding upstream 211177 6021828 ~ 6024822 (-)
G484707 NA non-coding upstream 214352 6025003 ~ 6027258 (-)
G484394 NA other downstream 533171 5274086 ~ 5274270 (-)
G483481 NA other downstream 953994 4851757 ~ 4853447 (-)
G483512 NA other downstream 1188716 4618112 ~ 4618725 (-)
G483509 NA other downstream 1194123 4612852 ~ 4613318 (-)
G483285 NA other downstream 1636939 4125258 ~ 4170502 (-)
G484645 NA other upstream 443680 6254331 ~ 6256112 (-)
G484826 NA other upstream 1190242 7000893 ~ 7004773 (-)

Expression


Co-expression Network