XLOC_013478


Basic Information

Item Value
gene id XLOC_013478
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 28320730 ~ 28324155 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026589
acttaattacgaacacctgacctgcagtgcagcagaattcagaggtaagcttgtttttagatgctttattgttttatttaccccccgattttgttttacacacagtgtatcttaaatgtgacttggtgtagtgtttcgaattttgaagcatttaaaactttccagtttgtTTTTAGTCTTGTTTGCGCTCCGGTGACGCAGCTAATCTCGAGATAATGTCATATGTTTAACGTCagtctaaatgagcgtttttatggcaaattcaaagcgataaactccaaacgcagtttaaagttactgagcaacgttataaaacaatatcctttttatacgctgtatcattagtgttattattacaaagtgaactgctgtcgtttcactgttgttgttgttgttgttgttgttgtttttgcttttagacatgtaacttactccagagacgcactaacttgcacagcattgaatggaaaaggctttgtccatgtccagttgagggCATCAAGAACACGCAGATAGCCTAAAtgtgtcagcctggacagactgcagttctgctactCCATGCtaaggcttttgtatggatgtcttgaCTGCTAcagtgttctctaaaggttttctggaagctccatttgagggcatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacatctattgcagttctgctacacaagaccaaactctgcttttgtatggatgtctgactagtacggtgttctctaaaggtataactggagcaaaacaatagcatccgttacagtgaaatttgtgttcataaaagatagtgatatatgtgtaacaggtccagtacatttgtcataaaggttaaatcacagtaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtgtgtgcatactgctcgtagtaaacacacacgctgatctgatgcgggagagatatgcgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagttgaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggaccattgctgtctgtagaggatgaggcatttaatctaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtaattaataacagaacctatatgaacacttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccctgtaaacatgcaatttttatgatactaataataatggaataacaaattgctattactgttgtgtttgtgagagagaatcaaaccatatattctacacattttcttgatgatttactgaaatatttgtctatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatgtactttatacaaaaaaaaaaaaactactaaatatttagcatgcagacctgcaaagtgaaggagtaatgtcaggtttagattatagcatgagttttcactattgtgaaagtgaagccattcattcacaatgaattggaatagCAAACCTCGTTATTTATTTTGTAggaaactcacctggtgtttgagaaataaatatgtatttaagtgctagactgatatagatgttttagtgttttacacttgattctttgtccccagtgccatcttttacctcaagtgtttctctcaacctataaaacctcaaacagatgtaatgtat
>TCONS_00026588
cccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagatgtgttttgaacgttgaaataatgttgacagaacgtttaatgttgaacggttgaaaaacagcctgcatatgacaaggcttcaacgttgaaatgtggttgaaaatacgtcagttgttgttttaatgttgaaacaatgttgaatgataaatggttgaagaaagttacagaaatccttgtacaaatcaacgttgacatttttttatcatgatctgtatgttgaattaacgtcatggcttcacccaatattcaacatgtttggttaccatggtatcggaggactcggcgcacgcggccacgcgcagcgcttcacttcacttaattacgaacacctgacctgcagtgcagcagaattcagagacatgtaacttactccagagacgcactaacttgcacagcattgaatggaaaaggctttgtccatgtccagttgagggCATCAAGAACACGCAGATAGCCTAAAtgtgtcagcctggacagactgcagttctgctactCCATGCtaaggcttttgtatggatgtcttgaCTGCTAcagtgttctctaaaggttttctggaagctccatttgagggcatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacatctattgcagttctgctacacaagaccaaactctgcttttgtatggatgtctgactagtacggtgttctctaaaggtataactggagcaaaacaatagcatccgttacagtgaaatttgtgttcataaaagatagtgatatatgtgtaacaggtccagtacatttgtcataaaggttaaatcacagtaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtgtgtgcatactgctcgtagtaaacacacacgctgatctgatgcgggagagatatgcgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagttgaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggaccattgctgtctgtagaggatgaggcatttaatctaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtaattaataacagaacctatatgaacacttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccctgtaaacatgcaatttttatgatactaataataatggaataacaaattgctattactgttgtgtttgtgagagagaatcaaaccatatattctacacattttcttgatgatttactgaaatatttgtctatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatgtactttatacaaaaaaaaaaaaactactaaatatttagcatgcagacctgcaaagtgaaggagtaatgtcaggtttagattatagcatgagttttcactattgtgaaagtgaagccattcattcacaatgaattggaatagCAAACCTCGTTATTTATTTTGTAggaaactcacctggtgtttgagaaataaatatgtatttaagtgctagactgatatagatgttttagtgttttacacttgattctttgtccccagtgccatcttttacctcaagtgtttctctcaacctataaaacctcaaacagatgtaatgtat

Function

GO:

id name namespace
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000095317

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026589 False 1811 lncRNA 0.37 3 28320730 28323786
TCONS_00026588 True 1805 processed_transcript 0.38 4 28320730 28324155

Neighbor

gene id symbol gene type direction distance location
XLOC_013477 NA coding downstream 98982 28204344 ~ 28221748 (-)
XLOC_013476 iqcg coding downstream 423513 27843776 ~ 27897217 (-)
XLOC_013475 NA coding downstream 500778 27802551 ~ 27819952 (-)
XLOC_013474 NA coding downstream 637877 27681301 ~ 27682853 (-)
XLOC_013473 BX005470.1 coding downstream 691946 27590442 ~ 27628784 (-)
XLOC_013479 NA coding upstream 277438 28601593 ~ 28603115 (-)
XLOC_013480 CR388161.1 coding upstream 471404 28795559 ~ 28795675 (-)
XLOC_013481 si:ch211-174j14.2 coding upstream 612906 28937061 ~ 28938912 (-)
XLOC_013482 LO018677.1 coding upstream 760903 29085058 ~ 29085174 (-)
XLOC_013483 CT025546.3 coding upstream 888978 29213133 ~ 29213249 (-)
XLOC_013384 BX323829.1 misc downstream 8778499 19542102 ~ 19542231 (-)
XLOC_013472 NA non-coding downstream 958479 27358328 ~ 27362251 (-)
XLOC_013471 BX640463.1 non-coding downstream 985671 27334941 ~ 27335059 (-)
XLOC_013484 CT025546.1 non-coding upstream 983370 29307525 ~ 29307641 (-)

Expression


Co-expression Network