CI01000339_05932828_05933256 (H2AFX, H2AFX.L, HIST1H2AH, HIST1H2AJ)


Basic Information

Item Value
gene id CI01000339_05932828_05933256
gene name H2AFX, H2AFX.L, HIST1H2AH, HIST1H2AJ
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 5932698 ~ 5933256 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_05932828_05933256.mRNA
ATGTCTGGAAGAGGTAAAACCGGTGGAAAAGCACGCGCCAAGGCCAAGACTCGCAGCTCCCGTGCTGGTCTTCAGTTCCCCGTCGGCCGTGTGCATCGTCTTTTGCGAAAAGGCAACTATGCTGAGAGAGTAGGTGCTGGTGCTCCCGTGTACCTGGCTGCAGTCCTCGAGTACCTCACCGCTGAGATTCTCGAGTTGGCGGGAAACGCTGCAAGGGACAACAAGAAGACTCGTATCATTCCTCGTCATCTTCAACTGGCCGTCCGTAACGATGAGGAGCTGAACAAACTGCTCGGTGGAGTGACCATCGCCCAGGGTGGTGTTCTCCCCAACATCCAGGCCGTCCTTCTACCCAAGAAAACTGGTCAGGCTGTTGCCAGCTCTGGTAAATCTGGAAAGAAGGGTTCGTCCCAGTCACAGGAGTATTAAAAGCTGCGATGTCCTGAGATAACTGACCCAAAGGCCCTTTTAAGGGCCACCCCACTCGTCTGAAAAGAGCCAGTTCCATGTCTGAATGTAATGTAGCCAGTATTATTGAGTTGCCTTTTTACGTATTAAA

Function

symbol description
hist1h2ah Predicted to enable DNA binding activity and enzyme binding activity. Predicted to be involved in chromatin silencing. Predicted to be located in nucleus. Predicted to be part of nucleosome. Orthologous to human H2AC11 (H2A clustered histone 11).

GO:

id name namespace
GO:0006310 DNA recombination biological_process

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_05932828_05933256.mRNA True 559 mRNA 0.52 1 5932698 5933256

Neighbor

gene id symbol gene type direction distance location
CI01000339_05917956_05923087 ARCN1 coding downstream 8686 5917900 ~ 5924012 (-)
CI01000339_05863897_05897316 PHLDB1A coding downstream 35382 5862839 ~ 5897316 (-)
CI01000339_05853559_05857997 ATF5A coding downstream 74701 5853295 ~ 5857997 (-)
CI01000339_05832439_05832960 NA coding downstream 99587 5832337 ~ 5833111 (-)
CI01000339_05821180_05830949 SNX19A coding downstream 101749 5820877 ~ 5830949 (-)
CI01000339_05935601_05965650 C2CD2L coding upstream 2104 5935360 ~ 5965650 (-)
CI01000339_05984460_05985628 NA coding upstream 51075 5984331 ~ 5985656 (-)
CI01000339_05987848_05990050 TCNL coding upstream 54462 5987718 ~ 5990078 (-)
CI01000339_06044422_06045535 IFT22 coding upstream 111093 6044349 ~ 6046046 (-)
CI01000339_06049238_06060176 NA coding upstream 115982 6049238 ~ 6060359 (-)
G484659 NA non-coding downstream 71495 5858808 ~ 5861203 (-)
G484684 NA non-coding downstream 94909 5837573 ~ 5837789 (-)
G484683 NA non-coding downstream 95635 5836826 ~ 5837063 (-)
G484587 NA non-coding downstream 182743 5749380 ~ 5749955 (-)
G484544 NA non-coding downstream 353536 5578906 ~ 5579162 (-)
G484702 NA non-coding upstream 88572 6021828 ~ 6024822 (-)
G484707 NA non-coding upstream 91747 6025003 ~ 6027258 (-)
G484632 NA non-coding upstream 108551 6041807 ~ 6044025 (-)
G484710 NA non-coding upstream 134236 6067492 ~ 6067961 (-)
G484660 NA non-coding upstream 323373 6256629 ~ 6257120 (-)
G484394 NA other downstream 658428 5274086 ~ 5274270 (-)
G483481 NA other downstream 1079251 4851757 ~ 4853447 (-)
G483512 NA other downstream 1313973 4618112 ~ 4618725 (-)
G483509 NA other downstream 1319380 4612852 ~ 4613318 (-)
G483285 NA other downstream 1762196 4125258 ~ 4170502 (-)
G484645 NA other upstream 321075 6254331 ~ 6256112 (-)
G484826 NA other upstream 1067637 7000893 ~ 7004773 (-)

Expression


Co-expression Network