XLOC_013479


Basic Information

Item Value
gene id XLOC_013479
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 28601593 ~ 28603115 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027354
tgggctatatgcacgcaTTACTTCCGCGTTTTGTCTAAGGCCGCGGTCCAGCTTCCGGTCTGGGTGATTTTAAGCGGAGTTGAACAGTATTATGGCAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGTCAACGATTTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAACTTGAGAAGGGTTTCAAGTTGTATGCATCTTCCTACCTGTGCAATTATGAAGGTAAGTTCAGCTAGCCTGAAGGCTAACTTTAGCGTTAATACTCTTACGATCCGTCCATCTGCAGCTTTATCACgtaagtaaaaataatcatatgtGTACGTAATTCTGTCTCAAAGTGTCAGGTAAAAACAGGGCAGGAATAAGATCTCAGTGAGAGCTCATTACTACCGATAGATCTATGAAGAAATCGGAGTCTCCTCACCAGCTGAGAGTAGGACAGCATACATGTGAAATTCTGTCCCATTCATACTTTTACTGTTCTAAAGTGAGCACCACTGTTCAGTTCTGATAATTACAGAGACACAGATGCTGTCTTAGCTTGTaagcatgattattgagcaagatatatattaggaataaaataatacaatgccgTTCCATCCACAACAGACAAATAGCACTGTGTCAATGCTGATATTTATTGCTGAAACAGTGGAGATGACAGATGCAGTGTAACAGTGTAGATAGCATGCTTTCTATTTAGTcgataacattgtaattaaatgggagggtgacccaaaacaataaggtgtcattagttaatttcacatcaacaatttgtctatttcaatattttttagttttttacattaatgaacaaatgcttattcattgtgcttgttaactcacaatgtaatagctaatgttaacaagcatgactttggatttttattcattagtaaattagtttaacaatgttaaatattaaatagttattttaatagtgagcaaatacattaattaatgaaaccttattttaaagtgtgactaaagggagctacttttaaatcatttaaattaatgatttactgtgtagtttaatcggatgatattgctgcagatgcctttaaaaagaagatattttgaagaaagctgaaaacctgtaaccattgacttccatagtatgaaaaagaaCTACTTTGAATATCAGTGGTtgcaagtttccagctttcttcaaagtatttttgtttgtgttaaacatcagaaagaaactcaaacaggtttggaacaagtgaagaatgaggaaatagaattttcagttttgagtgaactgcctttaatgactccctttaaaaacctattaatattcttgtttctgttttctagGTAACATGAGATTCAGAGCTAGAAAATTTTATGTGTTACTCCATCCTGGAGCGGACATCCGTCAGAAGATCCATGCCATCGTCTGCTAGTTAATAGCTCCTGCTCTTGTGTGGCTGAGAGtgggatatgcaaacatttggttgctttgcttttccagacagcccattactct

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0021703 locus ceruleus development biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0071772 response to BMP biological_process
GO:0071773 cellular response to BMP stimulus biological_process
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027354 True 1523 lncRNA 0.36 1 28601593 28603115

Neighbor

gene id symbol gene type direction distance location
XLOC_013478 NA coding downstream 277438 28320730 ~ 28324155 (-)
XLOC_013477 NA coding downstream 379845 28204344 ~ 28221748 (-)
XLOC_013476 iqcg coding downstream 704376 27843776 ~ 27897217 (-)
XLOC_013475 NA coding downstream 781641 27802551 ~ 27819952 (-)
XLOC_013474 NA coding downstream 918740 27681301 ~ 27682853 (-)
XLOC_013480 CR388161.1 coding upstream 192444 28795559 ~ 28795675 (-)
XLOC_013481 si:ch211-174j14.2 coding upstream 333946 28937061 ~ 28938912 (-)
XLOC_013482 LO018677.1 coding upstream 481943 29085058 ~ 29085174 (-)
XLOC_013483 CT025546.3 coding upstream 610018 29213133 ~ 29213249 (-)
XLOC_013484 CT025546.1 coding upstream 704410 29307525 ~ 29307641 (-)
XLOC_013384 BX323829.1 misc downstream 9059362 19542102 ~ 19542231 (-)
XLOC_013472 NA non-coding downstream 1239342 27358328 ~ 27362251 (-)
XLOC_013485 NA non-coding upstream 794825 29397940 ~ 29403016 (-)

Expression


Co-expression Network