CI01000339_06883625_06889375 (CABP7, CABP7B)


Basic Information

Item Value
gene id CI01000339_06883625_06889375
gene name CABP7, CABP7B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 6883055 ~ 6890499 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_06883625_06889375.mRNA
ACAAACACACATCTTCTAATAGAAAAGAAATACACCACGTGTCAAGGGCAGCGCTACAAATGGGCCTAATATTTTTCCTCAACTGAAATCATTCAGAGCTGCAGTTCTATTCTAGTCTATAAATCAAGTGTAGTTTTGCAAGTAACATTTTAACTATTTTTATAACTTCTGGTCCTTTATTCTGCCTCAGAGTGAAAGCTAATTTCATTAATTGAAGACAACACTGAAGAAATGTCAAAAGGTCTGTTGTACCAAACTTGTACCAAACTTTGTTGATCTTGGTTCATTCAGATGCAAATTATCGAGACAAAGCAGAATATAAGTTGGCAAATTCAACTAATTTTATCTCAACTATATTTATCTCATTTATCTGATATCTAAACAAAGCTTAACAGACCGCTGAGAAAAAGTAATAATAGTCTACACTCACCTGTATGCAGTTGGAGTACGGAAAGCCAAAATAGACACAATAATTTTTACCTATCGCGTTTTAAAATATACAGTCGTTAAAAAACACGCAACTGAGGCTGAGACTATTGGAACCTTTTTATAGTTTAATACAGTATTATTTTACGAGTTTCTTCATATAAATTACACCAAGTACACGTAACATTTCAAAATGTATTATAAAGTGTATATTAATAGCATACAATACCTTATTAAATGACAAAGCCCCATACTCAGCATATAGAAACCCTGAATAAACACTGACTCTAGTAGACTACACACTCAATGAGTTAACGACAAACAACAGAAATAAAGATAAAAGATTTTTGGAGAAATCGAAAGAATTTGATTGAAAGTGGGCTTTGGTATCTAAGCGCTTTTGAGCGCGCGCATCTATAGTAGGCTAGGCAAGTGACTTTGGCTGTAGGGACATGCATCAGGCGCTCGCGCATTCGTGGATCAGACCTCACCAAGGACACATCTGCGCAGAGATTTCTTGGATTTTTGTTTAGCATCTCGAGCTTCCGCAAATCAACTGCCATCAGTAATTTCTATTAGTAAATGAGCACGTTATTTCTCATTGTGTAATGGAGGATCCCTATTTCTCGTGTGCTTATGTGTTATTTAGCCTACTTAAGTACATGCCACATTTCATCCGATATACCTAATGGACAAAAATGATTCAAATGTTAGAAATCTCGGTGATTGGAATGCTTCAATATATTCTGATTTGTACAACTCGAGACCGTTCGACTACCTGTAGGATTGCATCAAGCGCGTTCATGTACAGGGGACTTTGCTCTATTCCAGATATCCTCTCCTACAAGGCTCCCGTCAGCCTCCCTGAGGATGAAGTGGAGGAGATCCGTGAAGCCTTCAAGGTGTTTGACCGTGATGGGAATGGATTCATCTCAAAACAGGAGCTGGGAGTGGCCATGCGGTCTCTTGGTTACATGCCAAATGAAGTGGAGCTGGAGGTGATCATTCAGAGACTGGACATGGATGGCGACGGTCAGGTTGACTTTGAAGAGTTCGTAGCGCTTCTCGGACCAAAACTGTCTTCAGCTGGTATGCCTGACAGGTTCCACGGAGCCGAGTTTGACTCCATATTCTGGAAGTGTGACATGCAAAAGCTGACTGTGGATGAGCTGAAGAGACTCCTGTATGACACCTTCTGTGACCATTTGACTATGAAAGACATCGAGAACATCATCATGACAGAGGAGAGTCATTTAAACAGCCCCGAGTGCCAAGTAGATATTGACACAAGTCCCATGCAACAAGTCAAGCACACCTGTGTGCGCAAGAGCTTGATTTGTGCCTTCGCCATTGCATTTATCATCAGCGTCATGCTCATCGCAGCCAATCAGATGCTTCGAAGAGGAATGAAATGAAGAGTTCTGTTTCTAAGACAACAAATGACTGCGAAAAGGAAACAAGGTAAAAATGCAAAAAAGTCCACTAATGTCACTAGTTTCTATGATCACAGTTTTACAGAAACACCAAAGGCTGCACTTTCATTCTACTATAAACTCAAGGTGAAGACAGACTGTTGTTAGACAGGCAAAAGAACAATTTAGCCCAAACAATATAGTTTAAAAGTGTCACGGTCATTATTGTGTAGAACTAAAATAGGAGCAATTAGTAATGATCATTGTCCTATAAGATATCCTTGGCTTATGTTACAAAGTAGACATCTATTGTAGCACATTATACTAAAAATATGATATTATATTGTATGGTTGTAACCCACTTTAAATCAACACTGTGTCAGAGTCATTATATAAAATGACACTACGACATTGACAAAAATATTTCCCCAATGTTTAACAACGTTGTGTCACTGGATCATGTATGGTACATAGTTTTAGATACAGTAGATTTATTTAACAAACATGGTCCCAAACACCACCGGTTTGACCTTTGGGGATAATTGTCTATACAGAAAGGAATGACAGAATAAA

Function

symbol description
cabp7b Predicted to enable calcium ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; dorsal thalamus; and tegmentum. Orthologous to human CABP7 (calcium binding protein 7).
cabp7 Predicted to enable calcium ion binding activity. Located in trans-Golgi network membrane.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_06883625_06889375.mRNA True 2411 mRNA 0.38 6 6883055 6890499

Neighbor

gene id symbol gene type direction distance location
CI01000339_06867675_06873093 NA coding downstream 9962 6867205 ~ 6873093 (-)
CI01000339_06779978_06786701 SVOP coding downstream 96354 6779844 ~ 6786701 (-)
CI01000339_06770289_06776849 SSH1B, SSH1 coding downstream 106206 6770085 ~ 6776849 (-)
CI01000339_06753621_06757973 CORO1CB, CORO1C, CORO1CA, COR1C coding downstream 125082 6752018 ~ 6757973 (-)
CI01000339_06747841_06748719 NA coding downstream 133234 6747288 ~ 6749821 (-)
CI01000339_06917949_06919576 NA coding upstream 26696 6917195 ~ 6919576 (-)
CI01000339_06946465_06948712 MYHZ2 coding upstream 55902 6946401 ~ 6949328 (-)
CI01000339_06968980_06974513 MYHZ1.1, MYHZ1.2, MYHM86-1, MYHC4, MYHB, MYHZ2 coding upstream 78481 6968980 ~ 6974513 (-)
CI01000339_06983086_06984033 NA coding upstream 92033 6982532 ~ 6984033 (-)
CI01000339_06985199_06992207 NA coding upstream 94604 6985103 ~ 6992425 (-)
G484943 NA non-coding downstream 65992 6815204 ~ 6817063 (-)
G484870 NA non-coding downstream 148876 6733772 ~ 6734179 (-)
CI01000339_06655858_06658182 DPM2 non-coding downstream 225537 6655294 ~ 6658182 (-)
G484804 NA non-coding downstream 391138 6491716 ~ 6491917 (-)
G484801 NA non-coding downstream 398199 6484622 ~ 6484856 (-)
G484871 NA non-coding upstream 107312 6997811 ~ 6998975 (-)
G484826 NA non-coding upstream 110394 7000893 ~ 7004773 (-)
G484991 NA non-coding upstream 198522 7089021 ~ 7089385 (-)
G485000 NA non-coding upstream 233326 7123825 ~ 7124186 (-)
G484854 NA non-coding upstream 291720 7182219 ~ 7312927 (-)
G484645 NA other downstream 626943 6254331 ~ 6256112 (-)
G484702 NA other downstream 858233 6021828 ~ 6024822 (-)
G484394 NA other downstream 1608785 5274086 ~ 5274270 (-)
G483481 NA other downstream 2029608 4851757 ~ 4853447 (-)
G483512 NA other downstream 2264330 4618112 ~ 4618725 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031176 cabp7b coding NC_007116.7 CM002889.2 32086448 ~ 32092856 (-)
bowfin (Amia calva) AMCG00018678 LOC104923679,LOC100329495,LOC107386260,LOC102231850,LOC107599169 coding CM030135.1 CM030135.1 17933745 ~ 17959525 (+)