XLOC_013488 (mhc2dbb)


Basic Information

Item Value
gene id XLOC_013488
gene name mhc2dbb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 29922939 ~ 29925717 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026600
ATAACAACACTGAATAACAATGTTCAATGTTCTTGTGATACGCTTGGCCTTGCTGTTGCCTTTTCTGCTTGAAACAGCTCATGGACATTATGGATTTGTCCAGTTTACCTGCCATATGCTTGGTTCTCTACAAAATGTAGAGGTTACATACTCTATCTATTTTGACACAACCGAATTGCTGAGATTCAACAGTACAGAGAATAAAGCCGTTGCTTACACTGAATATGCAATGAAATGggcaaatgatttaaataaacagCCTAAATGGCTACACGAACAAGTAGAGAAAAATATTGCAGACTGCAAGCTCTTTGGGGAGACATATTTCCCTCTTGTAGCAAAAACAGTAAAACCAGAAGTCTTTGTGCGGTCATTAAGGGAGGCCAGTGGTAAAAGGCCAGCACTGTTGAGCTGCAGTGCCTATAACTTTTACCCCAAGCACATCAAACTGACGTGGATGAGAGATGATAAAGTGGTTACAGCTGATGTGATGTCCACTAAGGTGATGGCTGACGGAGACTGGTACTACCAAATTCACTCTCACCTAGAATATTTTCCTCAACCTGGGGAGAAGATCTCCTGTGTGGTGGAACACGCGAGCTCCCATAAACCCATGATCTATTACTGGGattcATTTTTGACAGAGTCAAACAAGAATAAGATAATAACTGGGGCTGCAGGAATAGTTCTGGGGGCCATAATGGCTGCCGGAGGACTGATCTACTATAAAAGAAAACACACAGTGAAATCCCATGTTCATGTCCTTATTTACTAGTAGGCAACACATCAGCTGGAAGTCAATACATCGGATGCTCTGAACCTCTGCAGACCCTCAGCGAGTAAATGAAGATGTGCAGTGGATAAGCACAGACTGTGTACCTGCATGTGAAAAACACTAATCCTCTCTGTAAGATCTGTAAAGACCTTTAAGATCTCAACTGCAacttttattgattgattgattgaaaaatCAGTCAATTTTATTGATCTTTTATTGAAAAAGAGACTTTCTCCTCTGGTTAGTTTTACAATCACATTTGATCATCACACATTATCTTTCATAAGGATTTAGTCTAAATAATCTTTGTTTTATGTATGACGATTCATAATATCTCTATCTAATATGGTATATGTGCTCATAGACATCTCCGTAAGGATAAACTGACAGATCAGTTATCTCAACAGGATGTCTATATTATGAAGATAAAGCACAGTGGCTCTATTATTGTACGATGTACcaccaaaaatgttttatttactaatttttaaatgaacaatgaaataaatgaaataaattca

Function

symbol description
mhc2dbb Predicted to enable MHC class II protein complex binding activity. Predicted to be involved in antigen processing and presentation of exogenous peptide antigen via MHC class II; peptide antigen assembly with MHC class II protein complex; and positive regulation of T cell activation. Predicted to act upstream of or within antigen processing and presentation and immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MHC class II protein complex.

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0019882 antigen processing and presentation biological_process
GO:0042613 MHC class II protein complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010112-2 Predicted to enable MHC class II protein complex binding activity. Predicted to be involved in antigen processing and presentation of exogenous peptide antigen via MHC class II; peptide antigen assembly with MHC class II protein complex; and positive regulation of T cell activation. Predicted to act upstream of or within antigen processing and presentation and immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MHC class II protein complex.

Ensembl:

ensembl_id ENSDARG00000056330

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026600 True 1299 mRNA 0.38 5 29922939 29925717

Neighbor

gene id symbol gene type direction distance location
XLOC_013487 BX908800.1 coding downstream 3834 29918062 ~ 29919105 (-)
XLOC_013486 cmc2 coding downstream 24570 29885190 ~ 29898369 (-)
XLOC_013485 NA coding downstream 519923 29397940 ~ 29403016 (-)
XLOC_013484 CT025546.1 coding downstream 615298 29307525 ~ 29307641 (-)
XLOC_013483 CT025546.3 coding downstream 709690 29213133 ~ 29213249 (-)
XLOC_013489 si:ch73-103b9.2 coding upstream 32936 29958653 ~ 29962234 (-)
XLOC_013490 si:ch211-220f16.2 coding upstream 42488 29968205 ~ 30021479 (-)
XLOC_013491 gins2 coding upstream 555313 30481030 ~ 30499489 (-)
XLOC_013492 emc8 coding upstream 574973 30500690 ~ 30504652 (-)
XLOC_013493 NA coding upstream 826767 30752484 ~ 30753423 (-)
XLOC_013384 BX323829.1 misc downstream 10380708 19542102 ~ 19542231 (-)
XLOC_013482 LO018677.1 non-coding downstream 837765 29085058 ~ 29085174 (-)
XLOC_013494 FO834814.1 non-coding upstream 928779 30854496 ~ 30855535 (-)
XLOC_013495 NA non-coding upstream 1034455 30960172 ~ 30961069 (-)
XLOC_013500 NA non-coding upstream 1798389 31724106 ~ 31724812 (-)
XLOC_013501 NA non-coding upstream 1806906 31732623 ~ 31737816 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000052_03490583_03492859 NA coding CI01000052 null 3490147 ~ 3492859 (+)