XLOC_013489 (si:ch73-103b9.2)


Basic Information

Item Value
gene id XLOC_013489
gene name si:ch73-103b9.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 29958653 ~ 29962234 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026601
TGACTCCAAACATCCGTTCTCTCAGTTTACTTCACCAGTGCTGTGATTGAAGCTGTCCAGGATGGATGTCTCTGCAAGCTGTGCGTCAGACGATGCTGATGCAGAAAAACAGTCGGCGAATATTGACAGCTCAAAAAGGAACTCTGAGTCTTCGGGCAGAAAGTATGTCAATGTGTTACTGGATCTCAGTGAAGAGGATTACTGCATTGAGAACAACGTGTATTTGTTGCAGAGCCGCACTGGCTGGGAAGACGCTGTTGAAGGGTGGGCAAGATTTCCCTCTTTCGCTGCATTCCCTCAATCACAAAGAAAAGGTAAAAACAAGCAAGACGTCATCGTTTCTCATTGCCTTCTATGCGCGGACCTTAAACCATCTGAACTTGATTCTCAAACCCCTCTGAATCCTGCAAAAGAAACTCACAACACACTCTCCTCTCCCACTTCAGACGAACTCTACTCCTTTAGCTTATCTCTGAAAAATATGTCAGGGCCATTAATCAATAAACTGCTGTCAGGAGAGGAACTGTCTGCACAAAAGAAATCGCCAACAGTTTGCTATTATCAACCAGAATCGTGTCAACTGCTAAAAGAGCAGACAGTTGGTCTCAGCATTAGAAGCTTCAGTGTATTGCCGCCTCTTAAGGAGTCCAGGATCTTTTTAAAATCAGTGCAGCCCACAGATTGGCATCCAGCAGAGGAAGACAAGAACATGACGCCCAGAGATACCAGTGTTGAAGGTAAAATAAGTGCAGGAAATGATATCAAAACTCTCATGGACTTCACCCCAGGAGAGAATAGCTACAAGTGTAAAGGAGCTCTCGGCACAAAACACTGTCTGTCCCAGGACAATACTCAACTGCCTTCTACTTATAACATCAATTTTCAAAATAAGTACGAATTTCACTCCAGCGCCTTGCCCCAGTTTCCTGCACCCTTGGGACGAAATTTCAGGCAGGAAGAACTGACGAGGTCTTCAACCAGGAATAACACCAGCCATAGATTGTTTTCTAGCCACAAAACGAGAGATCTGAAAAGACCCGAAGCTCACCGACTAATGCTTATAGGAACTAGAGTTCACATGCCTTTGTGATGAATATCATTTTTCTTAGTTGCACCAGACTGTACAAAGTAGTGCAATACTGTTTTTAAATGGCAGgaatccaaacacatgctctacgTGTAGcaatatatgaaatattattttgcaactaaaata
>TCONS_00026602
ACACGCTGTCCGTGAGCTCGATCACGTCTCGCTGTTGATGTAACCTTACACTGCAATGGGCAGTTCAAGGCTGTGATTGAAGCTGTCCAGGATGGATGTCTCTGCAAGCTGTGCGTCAGACGATGCTGATGCAGAAAAACAGTCGGCGAATATTGACAGCTCAAAAAGGAACTCTGAGTCTTCGGGCAGAAAGTATGTCAATGTGTTACTGGATCTCAGTGAAGAGGATTACTGCATTGAGAACAACGTGTATTTGTTGCAGAGCCGCACTGGCTGGGAAGACGCTGTTGAAGGGTGGGCAAGATTTCCCTCTTTCGCTGCATTCCCTCAATCACAAAGAAAAGGTAAAAACAAGCAAGACGTCATCGTTTCTCATTGCCTTCTATGCGCGGACCTTAAACCATCTGAACTTGATTCTCAAACCCCTCTGAATCCTGCAAAAGAAACTCACAACACACTCTCCTCTCCCACTTCAGACGAACTCTACTCCTTTAGCTTATCTCTGAAAAATATGTCAGGGCCATTAATCAATAAACTGCTGTCAGGAGAGGAACTGTCTGCACAAAAGAAATCGCCAACAGTTTGCTATTATCAACCAGAATCGTGTCAACTGCTAAAAGAGCAGACAGTTGGTCTCAGCATTAGAAGCTTCAGTGTATTGCCGCCTCTTAAGGAGTCCAGGATCTTTTTAAAATCAGTGCAGCCCACAGATTGGCATCCAGCAGAGGAAGACAAGAACATGACGCCCAGAGATACCAGTGTTGAAGGTAAAATAAGTGCAGGAAATGATATCAAAACTCTCATGGACTTCACCCCAGGAGAGAATAGCTACAAGTGTAAAG
>TCONS_00026603
CCAGTGTAAGGCCCTTTAATGTATACTGTCTTTTAATATCCACCGCTGTGATTGAAGCTGTCCAGGATGGATGTCTCTGCAAGCTGTGCGTCAGACGATGCTGATGCAGAAAAACAGTCGGCGAATATTGACAGCTCAAAAAGGAACTCTGAGTCTTCGGGCAGAAAGTATGTCAATGTGTTACTGGATCTCAGTGAAGAGGATTACTGCATTGAGAACAACGTGTATTTGTTGCAGAGCCGCACTGGCTGGGAAGACGCTGTTGAAGGGTGGGCAAGATTTCCCTCTTTCGCTGCATTCCCTCAATCACAAAGAAAAGGTAAAAACAAGCAAGACGTCATCGTTTCTCATTGCCTTCTATGCGCGGACCTTAAACCATCTGAACTTGATTCTCAAACCCCTCTGAATCCTGCAAAAGAAACTCACAACACACTCTCCTCTCCCACTTCAGACGAACTCTACTCCTTTAGCTTATCTCTGAAAAATATGTCAGGGCCATTAATCAATAAACTGCTGTCAGGAGAGGAACTGTCTGCACAAAAGAAATCGCCAACAGTTTGCTATTATCAACCAGAATCGTGTCAACTGCTAAAAGAGCAGACAGTTGGTCTCAGCATTAGAAGCTTCAGTGTATTGCCGCCTCTTAAGGAGTCCAGGATCTTTTTAAAATCAGTGCAGCCCACAGATTGGCATCCAGCAGAGGAAGACAAGAACATGACGCCCAGAGATACCAGTGTTGAAGGTAAAATA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-199 No description available

Ensembl:

ensembl_id ENSDARG00000092489

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026601 False 1216 mRNA 0.43 3 29958653 29961818
TCONS_00026602 False 842 mRNA 0.45 3 29959057 29962234
TCONS_00026603 True 750 mRNA 0.45 3 29959124 29961784

Neighbor

gene id symbol gene type direction distance location
XLOC_013488 mhc2dbb coding downstream 32936 29922939 ~ 29925717 (-)
XLOC_013487 BX908800.1 coding downstream 39548 29918062 ~ 29919105 (-)
XLOC_013486 cmc2 coding downstream 60284 29885190 ~ 29898369 (-)
XLOC_013485 NA coding downstream 555637 29397940 ~ 29403016 (-)
XLOC_013484 CT025546.1 coding downstream 651012 29307525 ~ 29307641 (-)
XLOC_013490 si:ch211-220f16.2 coding upstream 5971 29968205 ~ 30021479 (-)
XLOC_013491 gins2 coding upstream 518796 30481030 ~ 30499489 (-)
XLOC_013492 emc8 coding upstream 538456 30500690 ~ 30504652 (-)
XLOC_013493 NA coding upstream 790250 30752484 ~ 30753423 (-)
XLOC_013494 FO834814.1 coding upstream 892262 30854496 ~ 30855535 (-)
XLOC_013384 BX323829.1 misc downstream 10416422 19542102 ~ 19542231 (-)
XLOC_013483 CT025546.3 non-coding downstream 745404 29213133 ~ 29213249 (-)
XLOC_013482 LO018677.1 non-coding downstream 873479 29085058 ~ 29085174 (-)
XLOC_013495 NA non-coding upstream 997938 30960172 ~ 30961069 (-)
XLOC_013500 NA non-coding upstream 1761872 31724106 ~ 31724812 (-)
XLOC_013501 NA non-coding upstream 1770389 31732623 ~ 31737816 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000028_09449656_09453949 NA coding CI01000028 null 9449103 ~ 9453949 (-)