XLOC_013497 (pdcd5)


Basic Information

Item Value
gene id XLOC_013497
gene name pdcd5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 31089957 ~ 31105391 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026614
GCATGCTATTTTTGGAAAGAAGTTCCTAACGTTGTCCGCCATAAAAAGAAATTTTACGATTCGATCTTCATAATAATTCAAAGCTGCGGGAGCTACTATACCAAACTCTGGATTTCTGCAGTGTCAATGACGTTCGACTAATCTGTTTATAAATAACACAACCTTTATCAAACGTAGCTTCTCTCACACAGGCAGAACACACAATTCGAATCGCATTTCTCTTTGAAAGTTCGGTGTGAATTTACAGAAATGGCTGATGAAGAATTGGAAGCTATAAGACAGCAACGTATGGCCGAACTGCAAGCAAAACATGGGGACCGTTCCAGTGACCAGCAGGGACAACAGGAAGCCAAACAGAGAGAGACTGAGATGAGAAACTCTATATTGGCTCAAGTCTTGGATCAGTCTGCACGTGCCAGATTGAGTAATTTGGCTCTTGTGAAGCCAGATAAAGCAAAAGCTGTGGAGAATTACTTGATACAGATGGCTCGGTTTGGACAACTTGGAGGAAAGATTACAGAAGCTGGATTAATAGAGATCTTGGAGAAAGTAAGTCAACAAACAGAGAAGAAAACCACTGTAAAGTTTAATCGACGTCGTGTAATGGACTCGGATGAAGAGAATGATGATGACTAATATGCAAGTGCAgttgatctgctgggatttttgtactcATGGTACTTCTGGCACTCTGGTCTGACTGCTGACTAGGACATAACAACAAATGACCAATCAATTGTTCTGCCCAAAACAATTACAGCCAAAGATCTTTGATCTGTGGTTAAACAGAATGTCTTTGACTAATGTTTCTGTTATGCCTTCTCTTTTTTCAGTTTAGCATAATCTCATCATTTTTCTTTACCTCAAAACAATACATTGCAGAAAAGGTGTTACCGTAATTATGGGGATCTGGCCACACATTTCTGGAGACGTGCAAACTTTTACATAATAAAGCAATT

Function

symbol description
pdcd5 Predicted to enable DNA binding activity. Predicted to be active in cytosol and nucleus. Orthologous to human PDCD5 (programmed cell death 5).

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-980 Predicted to enable DNA binding activity. Predicted to be active in cytosol and nucleus. Orthologous to human PDCD5 (programmed cell death 5).

Ensembl:

ensembl_id ENSDARG00000026072

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026614 True 959 mRNA 0.40 6 31089957 31105391

Neighbor

gene id symbol gene type direction distance location
XLOC_013496 gas8 coding downstream 38110 31033122 ~ 31051847 (-)
XLOC_013495 NA coding downstream 128888 30960172 ~ 30961069 (-)
XLOC_013494 FO834814.1 coding downstream 234422 30854496 ~ 30855535 (-)
XLOC_013493 NA coding downstream 336534 30752484 ~ 30753423 (-)
XLOC_013492 emc8 coding downstream 585305 30500690 ~ 30504652 (-)
XLOC_013498 mc1r coding upstream 120897 31226288 ~ 31227615 (-)
XLOC_013499 CU570893.1 coding upstream 193685 31299076 ~ 31423569 (-)
XLOC_013500 NA coding upstream 618715 31724106 ~ 31724812 (-)
XLOC_013501 NA coding upstream 627232 31732623 ~ 31737816 (-)
XLOC_013502 olfcs2 coding upstream 807368 31912759 ~ 31916845 (-)
XLOC_013384 BX323829.1 misc downstream 11547726 19542102 ~ 19542231 (-)
XLOC_013487 BX908800.1 non-coding downstream 1170852 29918062 ~ 29919105 (-)
XLOC_013485 NA non-coding downstream 1686941 29397940 ~ 29403016 (-)
XLOC_013504 BX908386.2 non-coding upstream 899667 32005058 ~ 32009056 (-)
XLOC_013505 NA non-coding upstream 934110 32039501 ~ 32042362 (-)
XLOC_013507 BX649622.1 non-coding upstream 1041317 32146708 ~ 32147630 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_03405451_03427728 PDCD5.S, PDCD5 coding CI01000053 null 3405052 ~ 3428148 (+)