Fish Transcriptome and Expression Database

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model fish

XLOC_013501

Basic Information

Item	Value
gene id	XLOC_013501
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007129.7
NCBI id	CM002902.2
chromosome length	51023478
location	31732623 ~ 31737816 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026974
cagggttcttgcaccattttaaaagtaaaatttaatgcttttaaagacctttttaagacctcaacaaatataatttaagacccaaaaattttataatttctttGGAATAGGCTTCTCATTTTAATGTTCTCGTTAGATTTAAATAAACTGTGCCTCGTCACAGTATggataacgttcgagTACCTGCCTTTTGGGTGTCTGGTGGTGAAATGAAACTGTTATAGCTGACT

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00026974	True	230	lncRNA	0.33	2	31732623	31737816

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_013500	NA	coding	downstream	7811	31724106 ~ 31724812 (-)
XLOC_013499	CU570893.1	coding	downstream	309054	31299076 ~ 31423569 (-)
XLOC_013498	mc1r	coding	downstream	505008	31226288 ~ 31227615 (-)
XLOC_013497	pdcd5	coding	downstream	627232	31089957 ~ 31105391 (-)
XLOC_013496	gas8	coding	downstream	680776	31033122 ~ 31051847 (-)
XLOC_013502	olfcs2	coding	upstream	174943	31912759 ~ 31916845 (-)
XLOC_013503	olfcs1	coding	upstream	227531	31965347 ~ 31969939 (-)
XLOC_013504	BX908386.2	coding	upstream	267242	32005058 ~ 32009056 (-)
XLOC_013505	NA	coding	upstream	301685	32039501 ~ 32042362 (-)
XLOC_013506	olfcw1	coding	upstream	397554	32135370 ~ 32139894 (-)
XLOC_013384	BX323829.1	misc	downstream	12190392	19542102 ~ 19542231 (-)
XLOC_013495	NA	non-coding	downstream	771554	30960172 ~ 30961069 (-)
XLOC_013494	FO834814.1	non-coding	downstream	877088	30854496 ~ 30855535 (-)
XLOC_013493	NA	non-coding	downstream	979200	30752484 ~ 30753423 (-)
XLOC_013487	BX908800.1	non-coding	downstream	1813518	29918062 ~ 29919105 (-)
XLOC_013507	BX649622.1	non-coding	upstream	408892	32146708 ~ 32147630 (-)
XLOC_013508	NA	non-coding	upstream	570660	32308476 ~ 32309563 (-)
XLOC_013509	BX908401.2	non-coding	upstream	787595	32525411 ~ 32527104 (-)

Expression

Co-expression Network

Homologous

species	gene id	symbol	gene type	chromosome	NCBI id	location
tiger barb (Puntius tetrazona)	G173295	NA	non-coding	NW_025047688.1	JAEQBD010000033.1	1495100 ~ 1495413 (+)
mexican tetra (Astyanax mexicanus)	G189498	gdf11,LOC108254821,LOC106513268,LOC107562248,LOC107573429,LOC107683628,LOC107385665	non-coding	NC_035918.1	CM008321.1	13489449 ~ 13496789 (+)