XLOC_013502 (olfcs2)


Basic Information

Item Value
gene id XLOC_013502
gene name olfcs2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 31912759 ~ 31916845 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026617
ttctttgcaggaCAAGTCTAAGCCTTCACATTTGTATTCAGTTTCTCTAAATCTATCTTAGTGTAAAGATTGATTATGCAGTTGTGGATTGTGGGATTAATTGGTGAAATAATCAGGCTTTGTAGTACAGAGCAGTCTTGTGGTCTGCAAGGCAGAGTTATTTCAGAGAGTCTATATAAAGAAGGAGATGTGATAATTGGTGGTCTGTTTCCAGTTTATAATGAGGCACCAGTACCTAACCATGCTTTTACTCAAATACAGAATAGATCTCGCTGTCAGGGTGTTGACCTTCGTTCATACCGCTGGCTTAAAACCATGCTTTTCACAGTGGAGGAGATTAATCGAGACCCCTTTCTGCTTCCGAACATTATTTTGGGGTACCTGGTAGCTGACACATGCTTAGCTGAGAGCACAACATTGAGTGCTGCTTTAGCAATAATGACAGGGCAGGAGGAGACAGTGTCAGACACAGAGTGCATTGTGGCACCTAGGGTACCTGTGATTGTCGGTGATGCTCGTTCCTCAGCCTCAATAGGGGTGGCTGACACACTGGGAGTATTTGATATCCCCATGGTGAGTTATTTTGCATCCTGTGCTTGTCTCGGTGACAATCACAGATTTCATACTTTCCTACGCACTGTTCCCAGTGATGCCTTCCAGGCCAAGGCCATGGCCCGTCTGCTTCACCTGCTAGACTGGACATGGGTGGGGGTGGTCGCAGGGGATGATGAATATGGTAAAAGTGGTGTGCAGCTGCTTTTGAAAGAACTGGAACATGTAGGGGTTTGTGTGGACTACCTTGAATTCATTCCAAAATCCCACTCACAGAGAAGAATCAGACGAACTGTAGAGACAATACAGAGTTCCACAGCTCATGTTGTGGTGACATTCGCCATTGCCCCTGATATAGAAGTTTTATTCAAGGAAGTGGTGGTGCAGAATGTGACCAATAGGCAGTGGATAGCCACAGAGGCCTGGAGCACCTCTGTTCAGTTCCTTGACCCAGCAAGCATTCCTCTCTTAGCTGGTACACTTGGATTTGCCCTGCACAGAGCTGATATTGAGGGTCTTGGTGCTTATCTTTCACAGCTGAACCCTGCAAAACAGTCAAATGAACCATTTGTAAAAGATGTATGGGAAGAAATTTTTGGGTGCTCGTTAGCACAGGATTGGCAGCCTTCTTTCAAAAGGCCAAAGTGCACAGGGTCAGAGAATGTGGAAATTCATGGCGGCATCTACACAGATGTTTCACAGTTAAGAGTCACTTACAATGTGTATAAGGCTGTGTATGCCATTGCTTATGCTATTCACAACATGATTGCTTGCCAGCCTGGAAGAGGCCCATTTGAAAATGGACAATGTCCTGATGTGAACCAAATAAAGCCTAGACAGCTTCTCCACTACCTAAATGCAGTAAACTTTACAACACCAGTGGGTGAGCTGGTTTATTTTGAAGATAATGGTGAGCCATCTGCCTCTTATGACATTATGAACTGGCATGTGGATGAAAGTGGAGCAGTGAATTTTGTCCAGGTGGGACAGTTCGATGCAGCCAACGGACCAGGCCAGGAGCTGAACATAAACATTAAGAAAGTGGTTTGGGGAGGGGGCTGGTCTGACCAAGTTCCTGTGTCTGTGTGCAGTGTAAGCTGCCTTCCAGGCACAAGAAAGTCTGTACAAAAAGGAAAAGCCATCTGCTGTTTTGACTGCCTCCCTTGTGCAGCAGGGGAAATCAGTAACTTGACAGACTCTACAAAGTGTATAAGATGTCCAGAGAAGTTCTGGTCAAATGTTGAAAGAACAAAGTGTGTCCCAAAGATTGTGGAATTTCTGTCCTTACAAGATACCATGGGGATTGTACTGACAGTCTTATCTGTCACTGGGGCTACACTGACTACAACTGTTCTGGCAACGTTTTTCCATCATCGTGACACACCTCTTGTGCGAGCCAACAACTCAGAGCTGAGCTTCATGTTGTTGGTGTCGCTCACTCTCTGTTTCCTTTGTGCTCTAGTTTTTATTGGTCGGCCTGCAACATGGAATTGCATGTTACGTCACACTTTGTTTGGAGTGAGTTTTGTTATCTGCATTGCCTGCATCCTCAGTAAGACTGTGGTGGTGCTGGTAGCTTTTCAAGCCACTCTGCCTGGATCTAACTTGATGCAGTACTTTGGACCAATCCAGCAAAGGGCAGGCATACTCGTTTGCACAATGGTTCAGGTTGTCATATGTTTGCTGTGGCTGCTGCTGGCTCCCCCTCTGCCCACAGAGAGAGCAGGAGGAGAGTTTGGTGCTCGGGTGATCCTGCAGTGCACAGTGGGATCCGTTGTAGGGTTTGCATTAGTGTTGGGATACATTGGTTTGTTGGCAGTGGTCTGCTTTCTACTTGCTTTTTTTGCTAGAAAGCTTCCAGACAGTTTTAATGAAGCTAAATTTATTACATTCAGCATGCTGATTTTCTGTACTGTGTGGATTGTGTTTGTGCCAGCATATGTCAGTTCACCAGGAAAGTACACAGTGGCTGTGGAAATTTTTGCCATTTTAGCTTCCAGCTATGGTCTGCTCCTCTGTATATTCACCCCAAAATGTTACATTATTCTGCTTAAACctgagaaaaatacaaaaaagaacaTGATggccaaata

Function

symbol description
olfcs2 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-238 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000100451

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026617 True 2645 mRNA 0.45 6 31912759 31916845

Neighbor

gene id symbol gene type direction distance location
XLOC_013501 NA coding downstream 174943 31732623 ~ 31737816 (-)
XLOC_013500 NA coding downstream 187947 31724106 ~ 31724812 (-)
XLOC_013499 CU570893.1 coding downstream 489190 31299076 ~ 31423569 (-)
XLOC_013498 mc1r coding downstream 685144 31226288 ~ 31227615 (-)
XLOC_013497 pdcd5 coding downstream 807368 31089957 ~ 31105391 (-)
XLOC_013503 olfcs1 coding upstream 48502 31965347 ~ 31969939 (-)
XLOC_013504 BX908386.2 coding upstream 88213 32005058 ~ 32009056 (-)
XLOC_013505 NA coding upstream 122656 32039501 ~ 32042362 (-)
XLOC_013506 olfcw1 coding upstream 218525 32135370 ~ 32139894 (-)
XLOC_013507 BX649622.1 coding upstream 229863 32146708 ~ 32147630 (-)
XLOC_013384 BX323829.1 misc downstream 12370528 19542102 ~ 19542231 (-)
XLOC_013495 NA non-coding downstream 951690 30960172 ~ 30961069 (-)
XLOC_013494 FO834814.1 non-coding downstream 1057224 30854496 ~ 30855535 (-)
XLOC_013493 NA non-coding downstream 1159336 30752484 ~ 30753423 (-)
XLOC_013508 NA non-coding upstream 391631 32308476 ~ 32309563 (-)
XLOC_013509 BX908401.2 non-coding upstream 608566 32525411 ~ 32527104 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000109_01133234_01144450 OLFCS2, OLFCS1 coding CI01000109 null 1133121 ~ 1144559 (-)