XLOC_013504 (BX908386.2)


Basic Information

Item Value
gene id XLOC_013504
gene name BX908386.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 32005058 ~ 32009056 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026619
cggttttccacaaggtaagtaaaaaatgcagaaacttttgacatatgaattcatcttgactaaggAACTCTTCACAGCACTGCATCTGAACAGTCACAACCTCACAGAGCTGCACAACTGCCCCACTCAAGATCAGTGTTGAAGCTGGAACCTCGTCTTGTGTACAGCAAAGGCAGAGCTGAAAATTCACTGTTTGTCTTGTATTGTGTGTGGCAAGACCTGGAATAACACCtgggagccctccaggaattcctGACACTTTACGCACAAGTCTCCTCATGCTAACCGGattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtataaattgtttttgctattcttcagtaaatacttttgatgtttaagttcaaaaagttgttattataaacataatttgcatttgtgaTGAACTTGACTTGTTGTTGTTGTGCAAGCTGTTTATTATAATGGCATTTCCAAAGGcatcatttgaaaatatttttttgcagtgcagttttacttgagcttgacataacagatgtatgacatgaataaatatcacaaaataaatataataataataaaaaatatacatttccttcaattataatagtttttaatcatttatatatgtatggtaatatgttattgcattaaaaactgttataaaatatatatatttgcatgtttgcgtgatttttgttttttgtggcattataaataaattataaatgtttcattaaaaatgtattgtgtttatttgcat
>TCONS_00027359
aaaacctgatttacgcctattatcgcagttttcttattttaaaaatatgtcatttttattttgttcatgaaaagcgtctgtaaactgggtcgaaactactgtatgaataaacttcggtccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagcgctgagttctcagatgagttcaactgtcaacattaaatagtgtgttaatgctgcataatgtattttattggagattagttggtgtttataaatatgttatcatttacttcaAATTTAATGAGTGAAATTATACTCGGTTGCccagtttagggtaactatgcctaataaaactttgattcattcatattatttattattttttttacttaaaaaatattacatttcaagtacttagttttaaaaatgtttttggctgatctttttcattttaaatgatttattgatgttcgggtcattgtatgtggcgatctattttttacagtctatggtcgcgatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaaacttttgacatatgaattcatcttgactaaggAACTCTTCACAGCACTGCATCTGAACAGTCACAACCTCACAGAGCTGCACAACTGCCCCACTCAAGATCAGTGTTGAAGCTGGAACCTCGTCTTGTGTACAGCAAAGGCAGAGCTGAAAATTCACTGTTTGTCTTGTATTGTGTGGTAAGTcatagttttataaaaaaaaaatattttattgcaacACTAAGTAGTCTATTCTGTGGTCAATATGATATAAAGGGCCTAAAATGGGACTGATGTGATCATTGTTTAGATTTCTAGATAAGTACTCATGgggctacacatgcagctgaagttagctacattgagtaggacatttctttcagtatactcttaaagagattcatccaaaaatgaaaattctgtcattaatgactcatacttcacttgttccaaatatgtctgagttgctttcttcagttaaacactaaaatatatattttaaagaaagatgaaaacctgcaaacattaacttccatagtatttgttttttcccacTATATATGTCAATGGtttcagcttttcagctttcttcaaaaaacctattttatgttcaacacaaagtaacttggaagtttttaaaaaaggtttacaaccacttgagggagagtaaatagtgaactattcctttaacccaatctagttgactttactagtAAATTGTATAGAAACCCCTTACATTTTATACAAGGTACAACTTAACAGCCgtacttgaattaaaatattactgtaagtcCAAGAAGATTGTAAAGGTTCTAAGTTAATTTAAAGAGGGCTGTTTAGTTtcactacattgtaaaaacaatgttttagttGATGAGGGCTGTTTTAGTTTAgttgtgtaaaaacataaagggtttaaggcaacaggtttctatgcagttttctaataaagtcaactagtttGGGTTAAGAGTGTAATGGGTTACAGTAATAGCAGTGAATCATGCAGGCATACAATAAATGTTTAGCCATTTAAAGCAATAAGCTTgttataatttagaaatatttttagggTGGAGCACAGTATGCTGTTGTAGTTTTCATATAATTGATGAGTCAAACATGAGATGTGTGTGTTAAATTGCAAGAAGTAAATTAACAatgttcatcaagattcaaatcttgcatcttatattttttaaggttttggcccaataatacccatattctgctatttaaaaaaacatgctggaatttgtGTCAGCATTCCCTTCAATGAAAACTACAGCAGTGGACATCAGTGGTGATAAAAATGTTTGAGAAGGATAAGGGTTTTCATAATGAGAAGTGCAGTCACTATCCTGATATCTGAGTGTAGAACTGACAGATCTACTTGGAATACATGGAAACATGCTAGAAATGTTTaacctattattattaatgacactttacatatataaataaatatccctGGACTTTCTAAATGAAACCTAACCATCATTCTTTGTTCAGTAATGATATTGTGCACTTCTAATACTTTACAGTGGCAAGACCTGGAATAACACCtgggagccctccaggaattcctGACACTTTACGCACAAGTCTCCTCATGCTAACCGGattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtataaattgtttttgctattcttcagtaaatacttttgatgtttaagttcaaaaagttgttattataaacataatttgcatttgtgaTGAACTTGACTTGTTGTTGTTGTGCAAGCTGTTTATTATAATGGCATTTCCAAAGGcatcatttgaaaatatttttttgcagtgcagttttacttgagcttgacataacagatgtatgacatgaataaatatcacaaaataaatataataataataaaaaatatacatttccttcaattataatagtttttaatcatttatatatgtatggtaatatgttattgcattaaaaactgttataaaatatatatatttgcatgtttgcgtgatttttgttttttgtggcattataaataaattataaatgtttcattaaaaatgtattgtgtttatttgcat
>TCONS_00027358
aaaacctgatttacgcctattatcgcagttttcttattttaaaaatatgtcatttttattttgttcatgaaaagcgtctgtaaactgggtcgaaactactgtatgaataaacttcggtccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagcgctgagttctcagatgagttcaactgtcaacattaaatagtgtgttaatgctgcataatgtattttattggagattagttggtgtttataaatatgttatcatttacttcaAATTTAATGAGTGAAATTATACTCGGTTGCccagtttagggtaactatgcctaataaaactttgattcattcatattatttattattttttttacttaaaaaatattacatttcaagtacttagttttaaaaatgtttttggctgatctttttcattttaaatgatttattgatgttcgggtcattgtatgtggcgatctattttttacagtctatggtcgcgatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaaacttttgacatatgaattcatcttgactaaggAACTCTTCACAGCACTGCATCTGAACAGTCACAACCTCACAGAGCTGCACAACTGCCCCACTCAAGATCAGTGTTGAAGCTGGAACCTCGTCTTGTGTACAGCAAAGGCAGAGCTGAAAATTCACTGTTTGTCTTGTATTGTGTGTGGCAAGACCTGGAATAACACCtgggagccctccaggaattcctGACACTTTACGCACAAGTCTCCTCATGCTAACCGGattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtataaattgtttttgctattcttcagtaaatacttttgatgtttaagttcaaaaagttgttattataaacataatttgcatttgtgaTGAACTTGACTTGTTGTTGTTGTGCAAGCTGTTTATTATAATGGCATTTCCAAAGGcatcatttgaaaatatttttttgcagtgcagttttacttgagcttgacataacagatgtatgacatgaataaatatcacaaaataaatataataataataaaaaatatacatttccttcaattataatagtttttaatcatttatatatgtatggtaatatgttattgcattaaaaactgttataaaatatatatatttgcatgtttgcgtgatttttgttttttgtggcattataaataaattataaatgtttcattaaaaatgtattgtgtttatttgcat
>TCONS_00027360
ttctcactcccaactcgtcatatactgacgcttggtcaggaaccctcggcgtaggttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatatgtacctgagcctgaggcgtcatagggagacgctggaggctcgtataattaccaatagatgtcaacgcaatttttaaaacctgatttacgcctattatcgcagttttcttattttaaaaatatgtcatttttattttgttcatgaaaagcgtctgtaaactgggtcgaaactactgtatgaataaacttcggtccacgtgacatcccttcacgtctatggtcgcgatcccaaggttcattgcgatcccaaggttcactgcggttttccacaaggtaagtaaaaaatgcagaaacttttgacatatgaattcatcttgactaaggAACTCTTCACAGCACTGCATCTGAACAGTCACAACCTCACAGAGCTGCACAACTGCCCCACTCAAGATCAGTGTTGAAGCTGGAACCTCGTCTTGTGTACAGCAAAGGCAGAGCTGAAAATTCACTGTTTGTCTTGTATTGTGTGTGGCAAGACCTGGAATAACACCtgggagccctccaggaattcctGACACTTTACGCACAAGTCTCCTCATGCTAACCGGattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtataaattgtttttgctattcttcagtaaatacttttgatgtttaagttcaaaaagttgttattataaacataatttgcatttgtgaTGAACTTGACTTGTTGTTGTTGTGCAAGCTGTTTATTATAATGGCATTTCCAAAGGcatcatttgaaaatatttttttgcagtgcagttttacttgagcttgacataacagatgtatgacatgaataaatatcacaaaataaatataataataataaaaaatatacatttccttcaattataatagtttttaatcatttatatatgtatggtaatatgttattgcattaaaaactgttataaaatatatatatttgcatgtttgcgtgatttttgttttttgtggcattataaataaattataaatgtttcattaaaaatgtattgtgtttatttgcat
>TCONS_00026620
ACTTACATTACTTTACAACTGCTTAATGCAGTACTGATGTATCTAGTAGTTAAGTGGGTTTAACTaatgtcacatctgtttttattcatttcagatgcagaaacttttgacatatgaattcatcttgactaaggAACTCTTCACAGCACTGCATCTGAACAGTCACAACCTCACAGAGCTGCACAACTGCCCCACTCAAGATCAGTGTTGAAGCTGGAACCTCGTCTTGTGTACAGCAAAGGCAGAGCTGAAAATTCACTGTTTGTCTTGTATTGTGTGTGGCAAGACCTGGAATAACACCtgggagccctccaggaattcctGACACTTTACGCACAAGTCTCCTCATGCTAACCGGattgcaatatgacagtctagtcagcataaacacctggactcaccaagcacactttggttctcagtgttttgtataaattgtttttgctattcttcagtaaatacttttgatgtttaagttcaaaaagttgttattataaacataatttgcatttgtgaTGAACTTGACTTGTT
>TCONS_00026621
aaaacctgatttacgcctattatcgcagttttcttattttaaaaatatgtcatttttattttgttcatgaaaagcgtctgtaaactgggtcgaaactactgtatgaataaacttcggtccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagcgctgagttctcagatgagttcaactgtcaacattaaatagtgtgttaatgctgcataatgtattttattggagattagttggtgtttataaatatgttatcatttacttcaAATTTAATGAGTGAAATTATACTCGGTTGCccagtttagggtaactatgcctaataaaactttgattcattcatattatttattattttttttacttaaaaaatattacatttcaagtacttagttttaaaaatgtttttggctgatctttttcattttaaatgatttattgatgttcgggtcattgtatgtggcgatctattttttacagtctatggtcgcgatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagatgcagaaacttttgacatatgaattcatcttgactaagggtaaggtttttgttcagaattaatcattaattaaaatcattgtattttctttgttaATATGTACAGATTTTAAAAAGAATGTACTTTCTTTAAACAAAGAACTCTTCACAGCACTGCATCTGAACAGTCACAACCTCACAGAGCTGCACAACTGCCCCACTCAAGATCAGTGTTGAAGCTGGAACCTCGTCTTGTGTACAGCA
>TCONS_00026622
ttctcactcccaactcgtcatatactgacgcttggtcaggaaccctcggcgtaggttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatatgtacctgagcctgaggcgtcatagggagacgctggaggctcgtataattaccaatagatgtcaacgcaatttttaaaacctgatttacgcctattatcgcagttttcttattttaaaaatatgtcatttttattttgttcatgaaaagcgtctgtaaactgggtcgaaactactgtatgaataaacttcggtccacgtgacatcccttcacgtctatggtcgcgatcccaaggttcattgcgatcccaaggttcactgcggttttccacaag

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010468 regulation of gene expression biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103223

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026619 False 786 lncRNA 0.33 4 32005058 32008314
TCONS_00027359 False 2669 lncRNA 0.32 3 32005058 32008862
TCONS_00027358 False 1323 lncRNA 0.33 4 32005058 32008862
TCONS_00027360 False 1164 lncRNA 0.36 5 32005058 32009056
TCONS_00026620 False 531 lncRNA 0.39 3 32005382 32007357
TCONS_00026621 False 805 lncRNA 0.34 2 32007021 32008862
TCONS_00026622 True 392 lncRNA 0.44 2 32008301 32009056

Neighbor

gene id symbol gene type direction distance location
XLOC_013503 olfcs1 coding downstream 35119 31965347 ~ 31969939 (-)
XLOC_013502 olfcs2 coding downstream 88213 31912759 ~ 31916845 (-)
XLOC_013501 NA coding downstream 267242 31732623 ~ 31737816 (-)
XLOC_013500 NA coding downstream 280246 31724106 ~ 31724812 (-)
XLOC_013499 CU570893.1 coding downstream 581489 31299076 ~ 31423569 (-)
XLOC_013505 NA coding upstream 30445 32039501 ~ 32042362 (-)
XLOC_013506 olfcw1 coding upstream 126314 32135370 ~ 32139894 (-)
XLOC_013507 BX649622.1 coding upstream 137652 32146708 ~ 32147630 (-)
XLOC_013508 NA coding upstream 299420 32308476 ~ 32309563 (-)
XLOC_013509 BX908401.2 coding upstream 516355 32525411 ~ 32527104 (-)
XLOC_013384 BX323829.1 misc downstream 12462827 19542102 ~ 19542231 (-)
XLOC_013495 NA non-coding downstream 1043989 30960172 ~ 30961069 (-)
XLOC_013494 FO834814.1 non-coding downstream 1149523 30854496 ~ 30855535 (-)
XLOC_013493 NA non-coding downstream 1251635 30752484 ~ 30753423 (-)
XLOC_013511 NA non-coding upstream 773557 32782613 ~ 32815354 (-)

Expression


Co-expression Network