XLOC_013505


Basic Information

Item Value
gene id XLOC_013505
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 32039501 ~ 32042362 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026975
CGCTGTTTACAGTGGGGCAGAGGAGCTAATAGCAGAACTGGTTGTTAGTTTTGGCATAATTTATCATCATCGTGGTATATTATTGCTTTATTGATCAAGTCCACAAGTTTCCTCTTGCTATTTTGGTTCATGAAATGGGATGAATCCTATAAGAGTGATAGCTGACGCGAATGGCGAGAAACACTCCTGGTTCAGTCGGAGATGCAGCTCGATGGCTGTACACGtttttgtgcgtacgcagcgttgatacatgaggcccctggtcttttgCTCAACTGTGCTTCACTTTGGCTCACAGAGTAACCTCAACTAAGCAAATATGCATCAGCCCTCACTGCCTGTCTGACGGTGGACTACTGGAGTTCATCACAGGCTCGACGAGAATGCAGAAGTGGCCACTACATTTGCTCTCCTTTCTAGATCCTTCCAGCGGGTTTACAAGGATGAGGCTGTCGGCATCTTTTTACACAGCATTCACAATTTAACACACATTAAAGACATGATGGTGTGGTACCCACATAAACGTTGGCCAACttactgaaaaa

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026975 True 545 lncRNA 0.45 3 32039501 32042362

Neighbor

gene id symbol gene type direction distance location
XLOC_013504 BX908386.2 coding downstream 30445 32005058 ~ 32009056 (-)
XLOC_013503 olfcs1 coding downstream 69562 31965347 ~ 31969939 (-)
XLOC_013502 olfcs2 coding downstream 122656 31912759 ~ 31916845 (-)
XLOC_013501 NA coding downstream 301685 31732623 ~ 31737816 (-)
XLOC_013500 NA coding downstream 314689 31724106 ~ 31724812 (-)
XLOC_013506 olfcw1 coding upstream 93008 32135370 ~ 32139894 (-)
XLOC_013507 BX649622.1 coding upstream 104346 32146708 ~ 32147630 (-)
XLOC_013508 NA coding upstream 266114 32308476 ~ 32309563 (-)
XLOC_013509 BX908401.2 coding upstream 483049 32525411 ~ 32527104 (-)
XLOC_013510 olfcg9 coding upstream 631850 32674212 ~ 32709328 (-)
XLOC_013384 BX323829.1 misc downstream 12497270 19542102 ~ 19542231 (-)
XLOC_013495 NA non-coding downstream 1078432 30960172 ~ 30961069 (-)
XLOC_013494 FO834814.1 non-coding downstream 1183966 30854496 ~ 30855535 (-)
XLOC_013511 NA non-coding upstream 740251 32782613 ~ 32815354 (-)
XLOC_013512 NA non-coding upstream 854203 32896565 ~ 32899998 (-)

Expression


Co-expression Network