XLOC_013507 (BX649622.1)


Basic Information

Item Value
gene id XLOC_013507
gene name BX649622.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 32146708 ~ 32147630 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026624
agcacgactgactgaagttttaaaatcatgcaacgtcataaagcagcagctgggcctgattctcacaaaaccaaaacagacgtgatgaaattccagatgtaaacacatttgaccttcctttggccaatttgatttggaaaagcttgaaaatcaactaaaggagcagcctgaacaaataaactgatggagtgaggacaaatgtccataccacgccactgataaagaagtggaaaaatgcattacaaggtagctacaacttgcccctgacagggatggaggaagaaagaagagaaagctaatgtgtcaaatgtctacatcactattttgttttattttttaaacaacattttaagtgtattaggatgttccctgatacttgaacaatttgtttctttcatttgcatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatgtatgtatgtgtgtgcgccaaattctgaagaaacatcttgatacatttttaataaacgtaatacaaataaaattataaatataaaattgcacaagacgtgtatatatatgaaatgtataatcatctcactcatgtcttgctgtttgtgcaattgattttgttcaagtttatttaaaaataagtttgactttatacttctgcaattatttatatatatatatat

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095508

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026624 True 699 lncRNA 0.29 3 32146708 32147630

Neighbor

gene id symbol gene type direction distance location
XLOC_013506 olfcw1 coding downstream 6814 32135370 ~ 32139894 (-)
XLOC_013505 NA coding downstream 104346 32039501 ~ 32042362 (-)
XLOC_013504 BX908386.2 coding downstream 137652 32005058 ~ 32009056 (-)
XLOC_013503 olfcs1 coding downstream 176769 31965347 ~ 31969939 (-)
XLOC_013502 olfcs2 coding downstream 229863 31912759 ~ 31916845 (-)
XLOC_013508 NA coding upstream 160846 32308476 ~ 32309563 (-)
XLOC_013509 BX908401.2 coding upstream 377781 32525411 ~ 32527104 (-)
XLOC_013510 olfcg9 coding upstream 526582 32674212 ~ 32709328 (-)
XLOC_013511 NA coding upstream 634983 32782613 ~ 32815354 (-)
XLOC_013512 NA coding upstream 748935 32896565 ~ 32899998 (-)
XLOC_013384 BX323829.1 misc downstream 12604477 19542102 ~ 19542231 (-)
XLOC_013501 NA non-coding downstream 408892 31732623 ~ 31737816 (-)
XLOC_013500 NA non-coding downstream 421896 31724106 ~ 31724812 (-)
XLOC_013495 NA non-coding downstream 1185639 30960172 ~ 30961069 (-)
XLOC_013513 NA non-coding upstream 890204 33037834 ~ 33039857 (-)

Expression


Co-expression Network