XLOC_013508


Basic Information

Item Value
gene id XLOC_013508
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 32308476 ~ 32309563 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027361
TATGTGCTCATGCTTATAATGCATATGTGTTTGCTTGAACCATGATAATCTAATGAGCCCACGCAATGATATGATGAGACATTctgtttgaccttaaaatgagacAGGAACTTTCCACACCTATAATGTCAAATAACTAAATCTGTAACAAACAAGCCTTGCAGAAAGTCCctgtctgggttgcagctgtgacGTGTGACTTTTCTAAACAGAAAGGAGAACTGGAGCAGATgaggaaaatattgctttattgtcttactaatcactcttttcttttgatatatatttttgctaTTGGAGGAATATACTCCCATTTGCCTCACtattcattatttacaatatgtgTTTTTGTCAGATATGATGATGTCTCCTGATATAGCGTACTTCTACTTAACCCCTGTTATAATGCGTTTCTAACTAACTGCTAAAACCACAAGAGCTGTGTGTGGGTGCTGGCTGGAGACAGAGCTGCAGAGGGGCTTCCCCTAGATGGGTGCATACACAGGTCAAGAGTTCATAGACAGGACTATGAGGAAAAGCAGATGTGAGGTATCTCTGTGTGCAGACCACAGACCTTTGAGAGATGATTCTGCCTGATAACAGCTGATGGCAACAATAGAGATTGGGGGTAACTGATCAGAGGAGTGGCCAAAAAGATTGAACGCTGCTGATGGATAAAAGGAGGGAGTCGAGAGAGTTCGAGAGCTTTTGGACATCCAGACTGCTTGGCTGACGGTTCTTCAAAAGCCCAGGATCCTGACCTTCGCTTTATTCACTTATGCtcgataaataaattaattgattttgattaattgaCTCCTGACCGATTATTGAATTGGGGTGGACTAAGGGAAGTGAGAAATAGTCCAA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044464 obsolete cell part cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027361 True 870 lncRNA 0.41 2 32308476 32309563

Neighbor

gene id symbol gene type direction distance location
XLOC_013507 BX649622.1 coding downstream 160846 32146708 ~ 32147630 (-)
XLOC_013506 olfcw1 coding downstream 168582 32135370 ~ 32139894 (-)
XLOC_013505 NA coding downstream 266114 32039501 ~ 32042362 (-)
XLOC_013504 BX908386.2 coding downstream 299420 32005058 ~ 32009056 (-)
XLOC_013503 olfcs1 coding downstream 338537 31965347 ~ 31969939 (-)
XLOC_013509 BX908401.2 coding upstream 215848 32525411 ~ 32527104 (-)
XLOC_013510 olfcg9 coding upstream 364649 32674212 ~ 32709328 (-)
XLOC_013511 NA coding upstream 473050 32782613 ~ 32815354 (-)
XLOC_013512 NA coding upstream 587002 32896565 ~ 32899998 (-)
XLOC_013513 NA coding upstream 728271 33037834 ~ 33039857 (-)
XLOC_013384 BX323829.1 misc downstream 12766245 19542102 ~ 19542231 (-)
XLOC_013501 NA non-coding downstream 570660 31732623 ~ 31737816 (-)
XLOC_013500 NA non-coding downstream 583664 31724106 ~ 31724812 (-)
XLOC_013514 NA non-coding upstream 733199 33042762 ~ 33047444 (-)

Expression


Co-expression Network