XLOC_013513


Basic Information

Item Value
gene id XLOC_013513
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 33037834 ~ 33039857 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026976
ATGCACAAGATATCAAAACATGGGTTTGATAAAATACTAGAGCCTCTTGTCAAGGATATTTCATCACTGGAAACTAATGGAATTCAGATTCCTTTATTTTATCATGCCGTTTATGGAACCATTGTCCAAGTTACTGGTGACAACCTTGGTATTCATTCATTGTTTGGTTTTGTGGAATCATTCAGTGCTAGGTACTGTTGCCACTTTTGCCTGCTAGAGAAAGAACACTTTCAGACAGTGTTTTGTGAAGATAGTCCAAAAATTTCAGTGCGAACTAAAGAACTTCATTCAGAGCATTGTGAGAGAATGCAAAGCAATCCCAGTCTACCTTATGTAATGGGAGTAAAAAGGTCTTGCCTTTTAAATTCTTTAGAATATTTTCACACTACTGCTAATTTCTCAGTTGATATTATGCACGACATATTAGAGGGGGTTGCGCAATATGAGATGAAGTTACTCATTCAGCACTTGATTGACAATTACACCACATCAGCAGAAGTACAGAGAAGAATTCAGAGTTTTAATTATGGCTTCTtggaacaaaacaacaaacatccTGGTGTGGAATTAAAAGAGTCTTCCAATGACCTGGGCTTAAATGCCATTCAGAGCTGGTGTTTACTGCGCTACTTACCCATTATGTTTGGAGATCTTGTGTGTCCTAATGATCAGCActggtatttgtttattttattgcttcAGATCATCAACATTGTATTTTCTTCAGTTATATCCAGTGGAATAACCATTTATTTGAAGCATCTGATTTCGGAGCACCACAGTTTATTTAAGCATTTGTTTCCTGATCGGAACTTGTTGCCAAAGCGTCATTTTATGGTGCACTACCCCACTTGTATGCAGAAAATTGGACCAGTGTTACATTGTTGGTTTATGTGCTACGAAGGAAAACATAATGTTTtcaaaaagcagttaaaaaactttaaaaacataacaaaaacattgGCAAAGAAACACCAGTGCCAAATGGCATATATTTGGCAAACATTTGATCCAAATTATGTGAAATTAGGTCCTGATAAAATGGTTCCCCTGAATGAAATGGAAGTTAGTGTTGAGATGGCTGAGAAACTTAATGTTCCTTTGTGGACTAAGGTCCTAAGTGTGAAATGGGTCAAGTTCTGTGGAAATACTTATCGCTCAGGTTTAGCAGTTTGCGTTAAATTTCAAAATGACATGCCTGTTTTTCATGCAATTCAGAATGTTGTTACCAGAGATGAGCGAATACTATTTATTACAACTGCACTGGAAACATCATGTTTAGTTGAACCTGTTCATGCCTACAAAGTTGCACAAACCATAGAAACGTGTTATGTTTTGGAGCTCAATGACATTTTGCAACACAAGCCGTTTGACATTGTAATttttttgtttgtttttccggggttgtcacgatactgaaatttAGTACCAATCgatctgaaattttaaaaatgtccttttcccactaacatttgttCACTGTTAGTTcaagtgctgatttgccattgtgtatatgtgctcaacagaaatgaattttgattggccgtgaaggtcatcaattcaccgaactcaccgctgtttactcagtgtaaccacagatacagggacactggagcatttcaaagtctTGTCGATCAGGTTTGTCTATAATCTGATATATGAATGATCCACTAAtgaaaatgctccagtgtccctgtgtctgtggttacactcagtaaacagcagtgagtttggtaaactgatgaccttcagggccaatcacagtcatttctgttgagcacatgaacaaaATGGCAAATCATCTGTGTTAATCACAGAATTagaggtaaaataaatgtactCAAATTGAACAGTACTAGAGACAGGttaactacagaaaaaacaaacaagcaaacatcttaatgctgatttatacttttgtctGGCGCCACATCGCACATCTCACGAAACAGACGAAGCTTTTATACTTG

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019220 regulation of phosphate metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0051174 regulation of phosphorus metabolic process biological_process
GO:0048785 hatching gland development biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0031399 regulation of protein modification process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0042325 regulation of phosphorylation biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0001932 regulation of protein phosphorylation biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0009790 embryo development biological_process
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0005634 nucleus cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026976 True 1970 lncRNA 0.37 2 33037834 33039857

Neighbor

gene id symbol gene type direction distance location
XLOC_013512 NA coding downstream 137836 32896565 ~ 32899998 (-)
XLOC_013511 NA coding downstream 222480 32782613 ~ 32815354 (-)
XLOC_013510 olfcg9 coding downstream 328506 32674212 ~ 32709328 (-)
XLOC_013509 BX908401.2 coding downstream 510730 32525411 ~ 32527104 (-)
XLOC_013508 NA coding downstream 728271 32308476 ~ 32309563 (-)
XLOC_013514 NA coding upstream 2905 33042762 ~ 33047444 (-)
XLOC_013515 CABZ01032906.1 coding upstream 34861 33074718 ~ 33080454 (-)
XLOC_013516 CABZ01032906.2 coding upstream 40986 33080843 ~ 33085006 (-)
XLOC_013517 olfcd3 coding upstream 50586 33090443 ~ 33093741 (-)
XLOC_013518 olfcx3 coding upstream 209139 33248996 ~ 33254039 (-)
XLOC_013384 BX323829.1 misc downstream 13495603 19542102 ~ 19542231 (-)
XLOC_013507 BX649622.1 non-coding downstream 890204 32146708 ~ 32147630 (-)
XLOC_013520 CU463109.1 non-coding upstream 674500 33714357 ~ 33735250 (-)
XLOC_013521 NA non-coding upstream 742607 33782464 ~ 33796612 (-)
XLOC_013522 NA non-coding upstream 906485 33946342 ~ 33949859 (-)
XLOC_013527 NA non-coding upstream 1187495 34227352 ~ 34227899 (-)

Expression


Co-expression Network