XLOC_013517 (olfcd3)


Basic Information

Item Value
gene id XLOC_013517
gene name olfcd3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 33090443 ~ 33093741 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026632
GTGCTTCAGAGGTTTCTGCCTTGCATATATATTAGCATGGCAAAGAAGATTGTGTCACTGCCAGTACTGCTGCTGATAGTGTATGGCATAAGTGTTTCAGCTTTGGCACAAGTCTGCAGACTGCTGAGTCAGCCTGCACTCCCTCTACTTTCTGCAGAAAGAGACATCAACATTGGGGCAATATTCTCAATCCACATTAGTGCTCTGCTAAAGATGCATTCTTTTACTTTCAAGCCAGAGTCAACTGCATGCATCAGATCAGTCACTTTGCCACATGTGCCTGCTTGAGTAACAGAAAAAGGTATGCATCCTTCTTTAGAACGATCCCCAGTGACTATTACCAAAGCAGAGCACTGGCTCAGCTTGTTAAGCACTTTGGCTGGACCTGGGTTGGTACAGTCAGGAGTCGCAGTGATTATGGCAATAATGGCATTGCAACATTCGAGGAAGCAGCAAAAAAAGAGGGGATTTGTATTGAATACTCAGAGGCCATATTAAGAACTGATCCACAAGATCAATTTCTGAAGACAGTAGAAGTGATAAAGAAGGGCACTGCGAGGGTTGTGTTAGCTTTTGTTGCATTAAGAGATTTTTACCCACTTTTAAAAGAAATTGCGCAACAAAACATTACAGGGCTGCAGTGGGTTGGCAGTGAATCTTGGATAACATCCCGAACTGTAGCAGAAACAAAGGAATATAGTTTCCTTTCTGGAGCTGTGGGCTTTTCTATAGCAAATGTCAAACTTGTGGGCCTACTAGATTTTCTAGTGAATGTGCACCCTGATCATGAACcgaaaaataaacttttaaaagaaTTCTGGGAAACAACATTCCAGTGCTCTTTTAATAACAGAGGAAGCGTTGGGTGTACTGGCTCAGAGAAACTAGCAAACTTACAAAATGAATATACTGATGCCTCAGAGCTACGGATAGCCAATAAAGTGTACACAGCAGTGTATGCTGTTGCACATACACTACACAATATATTTCAAGACTTCAAATCAGCCAACAGGAGCAAATTAAAACAACCAACACCTCAAATGGTACTGAACTATATGAAAGATGTAAGATTCACTGTCAAAACAGGTGAAGAAATATTTTTTGATACAAGTGGTGATCCAGTGGCAAGATATGATCTTGTGAACTGGCAACCTTCTGGGGATGGAAGTCTGCAGTTTAAAAATGTGGGCATCTATGACAGTTCACTTCCTTCAGAGAAATGTCTTCAGGTTAATCAGGAACATGTGCTATGGGCAGATAACAGTAGACAGGTATTATTTTCTACTGTATCAAAATAAGGTAATGAGAAAATTCTCAAAACAATCAATTTggcatatttgttttaaaatatatgacatcaGAGAGTCAAAAAGCTTTTGAAAATACAACAGTATTTAGAAGTATATTACAGTcagtatattacatttaaatatttaatcataCTCCTATAGGCCTTTTATATGACAGCTTATTTTTTCATAGTTGCCTGTATCCGTGTGCAGTGAGAGCTGCCCCCTTGGAACTAGGAAGGCTGTGCAAAAAGGAAGACCGGTCTGCTGTTTTGATTGTATTCCATGTGCAGATGGAGAAATAAGTAACAACACTGGTAAAGCAGTTCATGCTGGTTAACTCTCAAAAAAGTACTTTGAATTAAAATTTATTGTCCAATCCTCACACTGTTCCTTTTCCCCCCTGACAGACTCTAGTGACTGCTCTCCTTGTGATGAGGAGTACTGGtcaaatgaaagaaaagaaaaatgtgtgTTAAAAGTGATCGAATTCCTCTCTTATACTGAAATCATGGGGATGGTGCTTTGTATATTCTCCTTTATTGGATTGTTATTAACAGCAATGGTATCTTTTTTGTTCTATCTTCACAAAGAAACACCTATTGTCAGAGCCAACAACTCAGAACTGAGCTTCCTGCTGCTCTTCTCACTCTCACTGTGTTTTCTTTGTTCACTCACTTTCATTGGTCGTCCCACTGAGTGGTCCTGTATGTTGCGTCACACAGCATTTGGGATCACTTTTGTCCTCTGTATTTCCTGTGTTCTGGGGAAAACAATAGTGGTGTTAATGGCCTTCAGGGCTACACTTCCGGGAAGTAATGTCATGAAATGGTTTGGGCCTACACAACAACGACtcagtgttgtttttttaacattaatacaGGTGATTATCTGTGTTGTTTGGTTAACTGTCTCTCCTCCATTCCCATATAAGAATTTGAGCTATTACAGAGAAAAGATCATCCTGGAATGTAATTTGGGTTCAGCTTTGGGATTTTGGGCCGTTCTGGGTTATACTGGCCTGCTATCtgtcttgtgttttattttagcttttcttGCTCGTAAACTCCCTGATAACTTCAATGAAGCCAAGTTCATCACATTTAGTATGCTCATATTTTGTGCTGTTTGGCTCACATTCATTCCAGCTTATGTCAGCTCTCCTGGAAAATTCACAGTAGCAGTGGAGATATTTGCTATCTTATCTTCAAGTTTTGGTTTACTATTTTGCATATTTGCTCCGAAATGTTACATAATTTTACTCAaaccagaaaaaaacacaaagaaacaaaTGATGGGAAAGTCGTCttctaaaactatttaaaatcatACAAGTAAACAACATTTTCTGTCTTGTGGTTAGCA
>TCONS_00026633
ATGGCAAAGAAGATTGTGTCACTGCCAGTACTGCTGCTGATAGTGTATGGCATAAGTGTTTCAGCTTTGGCACAAGTCTGCAGACTGCTGAGTCAGCCTGCACTCCCTCTACTTTCTGCAGAAAGAGACATCAACATTGGGGCAATATTCTCAATCCACATTAGTGCTCTGCTAAAGATGCATTCTTTTACTTTCAAGCCAGAGTCAACTGCATGCATCAGCTTAAGTTTGCGTGAGTTTAAATTTGCTCAAACACTGATTTTTGCCATCGAAGAGATTAATAACAACACACAGCTATTGCCTGGTGTGTCTTTGGGCTATAAGATATATGATTCATGTGGCTCAATAGCTCAAGCTATATTCTCAGGCATGGCTTTGATGAATGGTTATGAAGAAACTTTGAGCGATACATCCTGCTCTAGACCACCAGCTGTTAATGCCATTGTAGGAGAGTCAAACTCCTCTCCCACCATAGCCTTGGCTTCTATAGCTGGTCCATTCAGTTTACCTGTTATCAGTCACTTTGCCACATGTGCCTGCTTGAGTAACAGAAAAAGGTATGCATCCTTCTTTAGAACGATCCCCAGTGACTATTACCAAAGCAGAGCACTGGCTCAGCTTGTTAAGCACTTTGGCTGGACCTGGGTTGGTACAGTCAGGAGTCGCAGTGATTATGGCAATAATGGCATTGCAACATTCGAGGAAGCAGCAAAAAAAGAGGGGATTTGTATTGAATACTCAGAGGCCATATTAAGAACTGATCCACAAGATCAATTTCTGAAGACAGTAGAAGTGATAAAGAAGGGCACTGCGAGGGTTGTGTTAGCTTTTGTTGCATTAAGAGATTTTTACCCACTTTTAAAAGAAATTGCGCAACAAAACATTACAGGGCTGCAGTGGGTTGGCAGTGAATCTTGGATAACATCCCGAACTGTAGCAGAAACAAAGGAATATAGTTTCCTTTCTGGAGCTGTGGGCTTTTCTATAGCAAATGTCAAACTTGTGGGCCTACTAGATTTTCTAGTGAATGTGCACCCTGATCATGAACcgaaaaataaacttttaaaagaaTTCTGGGAAACAACATTCCAGTGCTCTTTTAATAACAGAGGAAGCGTTGGGTGTACTGGCTCAGAGAAACTAGCAAACTTACAAAATGAATATACTGATGCCTCAGAGCTACGGATAGCCAATAAAGTGTACACAGCAGTGTATGCTGTTGCACATACACTACACAATATATTTCAAGACTTCAAATCAGCCAACAGGAGCAAATTAAAACAACCAACACCTCAAATGGTACTGAACTATATGAAAGATGTAAGATTCACTGTCAAAACAGGTGAAGAAATATTTTTTGATACAAGTGGTGATCCAGTGGCAAGATATGATCTTGTGAACTGGCAACCTTCTGGGGATGGAAGTCTGCAGTTTAAAAATGTGGGCATCTATGACAGTTCACTTCCTTCAGAGAAATGTCTTCAGGTTAATCAGGAACATGTGCTATGGGCAGATAACAGTAGACAGTTGCCTGTATCCGTGTGCAGTGAGAGCTGCCCCCTTGGAACTAGGAAGGCTGTGCAAAAAGGAAGACCGGTCTGCTGTTTTGATTGTATTCCATGTGCAGATGGAGAAATAAGTAACAACACTGACTCTAGTGACTGCTCTCCTTGTGATGAGGAGTACTGGtcaaatgaaagaaaagaaaaatgtgtgTTAAAAGTGATCGAATTCCTCTCTTATACTGAAATCATGGGGATGGTGCTTTGTATATTCTCCTTTATTGGATTGTTATTAACAGCAATGGTATCTTTTTTGTTCTATCTTCACAAAGAAACACCTATTGTCAGAGCCAACAACTCAGAACTGAGCTTCCTGCTGCTCTTCTCACTCTCACTGTGTTTTCTTTGTTCACTCACTTTCATTGGTCGTCCCACTGAGTGGTCCTGTATGTTGCGTCACACAGCATTTGGGATCACTTTTGTCCTCTGTATTTCCTGTGTTCTGGGGAAAACAATAGTGGTGTTAATGGCCTTCAGGGCTACACTTCCGGGAAGTAATGTCATGAAATGGTTTGGGCCTACACAACAACGACtcagtgttgtttttttaacattaatacaGGTGATTATCTGTGTTGTTTGGTTAACTGTCTCTCCTCCATTCCCATATAAGAATTTGAGCTATTACAGAGAAAAGATCATCCTGGAATGTAATTTGGGTTCAGCTTTGGGATTTTGGGCCGTTCTGGGTTATACTGGCCTGCTATCtgtcttgtgttttattttagcttttcttGCTCGTAAACTCCCTGATAACTTCAATGAAGCCAAGTTCATCACATTTAGTATGCTCATATTTTGTGCTGTTTGGCTCACATTCATTCCAGCTTATGTCAGCTCTCCTGGAAAATTCACAGTAGCAGTGGAGATATTTGCTATCTTATCTTCAAGTTTTGGTTTACTATTTTGCATATTTGCTCCGAAATGTTACATAATTTTACTCAaaccagaaaaaaacacaaagaaacaaaTGATGGGAAAGTCGTCttctaaaactatttaaa

Function

symbol description
olfcd3 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in olfactory epithelium and olfactory rosette.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050712-4 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in olfactory epithelium and olfactory rosette.

Ensembl:

ensembl_id ENSDARG00000068576

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026632 False 2654 nonsense_mediated_decay 0.39 3 33090443 33093741
TCONS_00026633 True 2566 mRNA 0.40 6 33090483 33093705

Neighbor

gene id symbol gene type direction distance location
XLOC_013516 CABZ01032906.2 coding downstream 5437 33080843 ~ 33085006 (-)
XLOC_013515 CABZ01032906.1 coding downstream 9989 33074718 ~ 33080454 (-)
XLOC_013514 NA coding downstream 42999 33042762 ~ 33047444 (-)
XLOC_013513 NA coding downstream 50586 33037834 ~ 33039857 (-)
XLOC_013512 NA coding downstream 190445 32896565 ~ 32899998 (-)
XLOC_013518 olfcx3 coding upstream 155255 33248996 ~ 33254039 (-)
XLOC_013519 olfcu1 coding upstream 239670 33333411 ~ 33337703 (-)
XLOC_013520 CU463109.1 coding upstream 620616 33714357 ~ 33735250 (-)
XLOC_013521 NA coding upstream 688723 33782464 ~ 33796612 (-)
XLOC_013522 NA coding upstream 852601 33946342 ~ 33949859 (-)
XLOC_013384 BX323829.1 misc downstream 13548212 19542102 ~ 19542231 (-)
XLOC_013511 NA non-coding downstream 275089 32782613 ~ 32815354 (-)
XLOC_013509 BX908401.2 non-coding downstream 563339 32525411 ~ 32527104 (-)
XLOC_013527 NA non-coding upstream 1133611 34227352 ~ 34227899 (-)
XLOC_013529 NA non-coding upstream 1457787 34551528 ~ 34554617 (-)

Expression


Co-expression Network