G483483


Basic Information

Item Value
gene id G483483
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 4587213 ~ 4592492 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU554763
TTATTGAGAGATCATGTTTATTTACAAAATATTGCATATCCAGGCTGTTTACGCTAATAAGACTCATATCCAAGGCACTTGATTGAGGTTTTAAGATGATTAATTGTAGATTACAAAAACTTAAATTGATTAAATGTTTTGATTAAAAAGTTTAAATGTTTAAAAATATTTTCTCTGATTAAAAGGCTTGTTTATATTAAGGGAGAATACTACAATTTTACATACAATAAGCTACAAGAGATACAGCATAATAAGACTTCACAAACATTCGAACAGTCAAGTCATTCTGACTACATAGAGATAGACAGACATACAATGCCTTGACCTCTCCAAAGCAAAGTGCATAAAGCTACCCAGCAGACTAATATAAGACCAGCCAACAAACACATTCAGAGAAGTGATTTTCATTGACTGTGTTAGCTTTTTTTTTTTTTTTAAATAAAAACGGCAAACTTAAAATGACAGCACAGCTTTTAAAACATTCCTCCTTGCTCTGTTTTCTATACAGTAAAAAGCTGGTTCTTGGGTTTCAGAAAGCTCCCACAGAGCAAGGCAAATCTTTTGATGCAATATTAAATTATCATTACAGTACTGACTGCATGTGGTACAGTGCAAGTGTTACGCTGCATGTCAAATTCAATGCAGTGATTTATGAAGAGGATAGAAAAAGTGGGTGTTTTCTATTGTAAATCTAAATGGCCTTGTTCAGGTGCTCTTGTTTCATAATATTTCATTCATTCTATGAGAAGAAAATTGGTTTCTCTGTTTGGAAGATTGAGGCATTGCCAATGTCATTAAAGATTTAAGACAAGGAGAAAAAAAAAAATCCAAACATTTTACAATTTCCTGAAAGGGTGTGTTTTGGATAATGCAAGTTTTAAGAACACATTATGGTTTGACCTTTTACAAATAACACACATACTTGTGGAGACAACAAAAGCACAGAGTACAAAATAGAGACACTTGGAGATCTAATAAAAGTAATCCATAATAACAAGTAACATCTTATGTAATCTAATCTAACAGTCTTAAATATACTTCATAATTCAGAAGAGAGAACTTTCACCCATTACCTTCTCTGATTCAATGCCAGTATATGATTATTTTAAGCGTACCTTCAGTATATTGCAGTAATTTAAGTAATCTATTACAGTTGTGGCATGTTATCAGGCTTTAGAGAATCACAAAGGCAGCTGAAGTGGCCATTAGGATGATGTTTTAGGAGGTGAGAAGTATATAAGAAAATAGACAGCATTCTGTCTATAGACTACTTAAAATTCTCCACTTCAAGGTTTCAAAGCTGTCATTATGGAAGCTCCTCATAGTAAGGAGGTGTGATACCATGAGATATGACGGTATATGAGCAAAATGTGCAAATAAAGAGTATGAGTGTGTGTTATATGTGTGTATTCTTGAAGTTTTGACTGTTGGGGTGTGGACATGGTTGCATATATCTGTATATGTGTGCATATGTGTGTGTGTGTGTGTGTTTGTAACTGATAGAAATCCTAGGGTGGTGTGACGGTGGGAGGTTTGGGTGCGGGTGAACTGGTTGGGATCACACCAGTGGCAAGGAATATGATAATCAGTACAATGACAAGGACTATCACAACAATAAGCACAATCAGCTTCACGTTCTTCCACCAGTAAGCGCGAGCAACCTTCTGAGAGGTGTGCTTGAAGTTCTGGGCCTAAAAAGAAGGAAAAAAACAGTACAATGTCAACAAGTGTGGGACTACAGATGCATACAGTAGGCTACTATTACAAAGTTTGAGCCGCGATGATTTGGCTTTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU554763 True 1795 lncRNA 0.35 2 4587213 4592492

Neighbor

gene id symbol gene type direction distance location
CI01000339_04500444_04509959 NA coding downstream 76431 4500257 ~ 4510782 (-)
CI01000339_04456736_04479850 SLC4A5 coding downstream 107363 4456157 ~ 4479850 (-)
CI01000339_04449553_04451937 NA coding downstream 135276 4448977 ~ 4451937 (-)
CI01000339_04441515_04447089 ABCB9 coding downstream 140124 4441366 ~ 4447089 (-)
CI01000339_04428882_04435809 NA coding downstream 151404 4428788 ~ 4435809 (-)
CI01000339_04704467_04717848 NA coding upstream 111598 4704090 ~ 4718867 (-)
CI01000339_04723905_04731220 NA coding upstream 131018 4723510 ~ 4731220 (-)
CI01000339_04734544_04737942 NA coding upstream 141652 4734144 ~ 4738241 (-)
CI01000339_04739732_04740796 NA coding upstream 147083 4739575 ~ 4740984 (-)
CI01000339_04742986_04767624 NA coding upstream 150336 4742828 ~ 4770294 (-)
G483494 NA non-coding downstream 3012 4580259 ~ 4584201 (-)
G483474 NA non-coding downstream 11197 4575785 ~ 4576016 (-)
G483460 NA non-coding downstream 14012 4544840 ~ 4573201 (-)
G483437 NA non-coding downstream 61995 4505392 ~ 4525218 (-)
G483425 NA non-coding downstream 90206 4496466 ~ 4497007 (-)
G483505 NA non-coding upstream 6545 4599037 ~ 4599393 (-)
G483510 NA non-coding upstream 22831 4615323 ~ 4615810 (-)
G483511 NA non-coding upstream 24593 4617085 ~ 4617306 (-)
G483513 NA non-coding upstream 30114 4622606 ~ 4622811 (-)
G483514 NA non-coding upstream 31352 4623844 ~ 4624442 (-)
G483285 NA other downstream 416711 4125258 ~ 4170502 (-)
G483199 NA other downstream 808662 3777891 ~ 3778551 (-)
G483104 NA other downstream 1174222 3394108 ~ 3401228 (-)
CI01000339_01988812_02024891 NA other downstream 2589768 1988537 ~ 2025183 (-)
G481662 NA other downstream 2854194 1723770 ~ 1733019 (-)
G483509 NA other upstream 20360 4612852 ~ 4613318 (-)
G483512 NA other upstream 25620 4618112 ~ 4618725 (-)
G483481 NA other upstream 259265 4851757 ~ 4853447 (-)
G484394 NA other upstream 664075 5274086 ~ 5274270 (-)
G484702 NA other upstream 1431240 6021828 ~ 6024822 (-)

Expression


Co-expression Network