G483526


Basic Information

Item Value
gene id G483526
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 4638502 ~ 4638914 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU554818
CTGGAGTTTGAGGCGGTGTGCTTCAATGGGAATGATTTTGAGAATGGGTAGTTGAGACGCTAAAACTCTGGGTTTGCTGCGCACCAGACAGCCCTGTTCAATGTCCCAGTCTGCCCCCTCCAGATACAGTCCTGATACATAACATCCTGGCAGAAAACAAAGAAGAACATGTGTTTGAGTCTCAGTGTCCTCATGTTCATTTTTTATGTGCAGGGTGTTGTGTGCTCTCACCCTGTCCTGGTCTCTCTTTGATCTCGTCCTCACTCCTGTACTGTGTAACCTGTGTGTAGAGAGTGGAGTGATCCAGAGGCCAGCCGTTCTTCCTGCAGGTGGCCTGGACCAGTGCTGTCAGGTACGATTCTGGGATATGCAAGCCTGACAACCACATCACGCAGGGTTCTCCCTCATTCACC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU554818 True 413 lncRNA 0.51 1 4638502 4638914

Neighbor

gene id symbol gene type direction distance location
CI01000339_04500444_04509959 NA coding downstream 127720 4500257 ~ 4510782 (-)
CI01000339_04456736_04479850 SLC4A5 coding downstream 158652 4456157 ~ 4479850 (-)
CI01000339_04449553_04451937 NA coding downstream 186565 4448977 ~ 4451937 (-)
CI01000339_04441515_04447089 ABCB9 coding downstream 191413 4441366 ~ 4447089 (-)
CI01000339_04428882_04435809 NA coding downstream 202693 4428788 ~ 4435809 (-)
CI01000339_04704467_04717848 NA coding upstream 65176 4704090 ~ 4718867 (-)
CI01000339_04723905_04731220 NA coding upstream 84596 4723510 ~ 4731220 (-)
CI01000339_04734544_04737942 NA coding upstream 95230 4734144 ~ 4738241 (-)
CI01000339_04739732_04740796 NA coding upstream 100661 4739575 ~ 4740984 (-)
CI01000339_04742986_04767624 NA coding upstream 103914 4742828 ~ 4770294 (-)
G483525 NA non-coding downstream 352 4637903 ~ 4638150 (-)
G483524 NA non-coding downstream 675 4637626 ~ 4637827 (-)
G483523 NA non-coding downstream 1039 4637148 ~ 4637463 (-)
G483522 NA non-coding downstream 3892 4633937 ~ 4634610 (-)
G483520 NA non-coding downstream 6601 4631624 ~ 4631901 (-)
G483545 NA non-coding upstream 30775 4669689 ~ 4678670 (-)
G483560 NA non-coding upstream 53288 4692202 ~ 4693431 (-)
G483567 NA non-coding upstream 66555 4705469 ~ 4705689 (-)
G483576 NA non-coding upstream 148775 4787689 ~ 4787889 (-)
G483493 NA non-coding upstream 188640 4827554 ~ 4834064 (-)
G483512 NA other downstream 19777 4618112 ~ 4618725 (-)
G483509 NA other downstream 25184 4612852 ~ 4613318 (-)
G483285 NA other downstream 468000 4125258 ~ 4170502 (-)
G483199 NA other downstream 859951 3777891 ~ 3778551 (-)
G483104 NA other downstream 1225511 3394108 ~ 3401228 (-)
G483481 NA other upstream 212843 4851757 ~ 4853447 (-)
G484394 NA other upstream 617653 5274086 ~ 5274270 (-)
G484702 NA other upstream 1384818 6021828 ~ 6024822 (-)
G484645 NA other upstream 1615417 6254331 ~ 6256112 (-)
G484826 NA other upstream 2361979 7000893 ~ 7004773 (-)

Expression


Co-expression Network