XLOC_013523 (olfcr1)


Basic Information

Item Value
gene id XLOC_013523
gene name olfcr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 33970385 ~ 33979693 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026638
tttcaagtGAACTGTGTCTCAGTGCCACACTATTCCAAAAACACTGAATGTCCCTGTGCAGCTCTATTAACTGCGAGCTCATCAAAAATgattgtttaattatatttaattctgTGGCTCAGCGGATGTGTAATTTGGTGTTTTCTCTGCTCCATGTTTCGCAACTGATCTTTTGGGATTGTGGTCAAAACAAATACATCTTCTTGCTTTGCATTGACACTGTAGGGTGCAGGACAACTGTCAGACAAGCTGAGAACGTAGAACTGTGCAAATGTCTATACATGTCCTGTCATGGCTCACACTTTCTGTGCCGGTGCTTCTGTTGTGGCCAGTATGTGGATCTGGAACTGAGGTGACTCCGCTGGAAACATGTGTGTACTTGATCACGCCACAGTACTCAGATGAACTTGGTACCTATCAAGACGGTGACGTGATTATTGGTGGTCTCATCAATTTACACAACCTGGCTGCAACTCCAGACCTGAGCTTCACCAGAAAACCTGGATTAGCACAATGCTTAGAGTTTCAGGAACGTACTTACCGCTGGTTTCAGGCAATTGTTTTTACAGTTGAAGAAATTAACCAACATCCCTCACTGTTGCCGGGGGTCAAACTGGGTTATCACATAATGGATAGTTGTTCCCGTTACCCACACAGCCTGACAGCAGCCATGTCAATGATCAGTGGAGGAAACAAAACTTGCGGTCCCACTAAACCAGCCAAGCTTCTGATCGGAGATTCTTCATCTACTCAAAGCATTCTTCTATCCACAACCTTGGTTCCCCTGAAGATTCCAATGATCAGTTACCTGGCTGGCTGCCCATGTCTCAGTGACAGACAAAAGTACCCAAATTTTTTTCGCACTATCCCCAGTGATTTTTATCAGGCACGCACCATGGTACAGATTGCCAAACGCTTTGGGTGGACCTGGATTGGAGCCGTGATTGCAGATAGTGACAATGGGCACGGGACTTTGCAGGCGCTTGAAGAAGAAATTAAAGGCACTGGGATCTGCTTGGCCTTTTATCATACACTCTACAGGGAGCGGTTACAAAAGGACGTGGCCTTTGCTGCCAGAACAGTCCAAGCCTCCTCTGCTCGAGTGATCCTGGTTTTGGCTTGGTATACAGATGTGGAGGCATTTCTGTTGGAATTGATGCGTAGGAATGTGACAGATAGGCTGTTCCTGGCCAGTGAGATCTGGAGCACCAGTTACAATATCATGGCTAATCCCCAGCTCTATACCATCTCTAAGGGAACTTTAGGTGTAGCTTTAAGAAGTGCACCCATACCTGGCTTCAGTGCACATCTTCAGCAGTTACATCCTTCCCGTTATCCTGAGGATAAATTCTTAAGGACCCTTTGGGAAAATACATTTGGTTGTAGTCCTACAATAAGCTCTTCCAAGATTATCCAGAATTCCTTGCCTCCATGCAGTGGCAGAGAGAGTCTAGAGGGTCACATTGAATTTATTGATACATCTCATCTGACAGtttcatataatatttatttggCTGTTTATGCTGCTGCTCACGCACTTCATTCATTGCTGGAGTGTAACTCACAAAATCACACCGattcaaaaataaaaccaaagtgCTCCTCTCCAGACAACATCACACCAGCGCAGCTTTTACAGCATGTTAAAGACGTTCAATACACCACTCAGTTAGGAGAGGAGTTCTATTTCCTGGAAGGTGGCATTCCACCAGTCTATGACTTGGTGAACTGGCAGATAGCTCCTGATGGTTCACTCCAATATGCTTTTATTGGACATGTGGATGGGAACCAGCTCAGTATTAATGACTCAGCTATCACATGGCCTGGAGATTCTGGCAAGGTTCCAATATCTGTGTGCACGTCTGAGTGTCCTCCAGGCACACGTAAAGCCATTAAGAAGGGTCTTCCAGTGTGCTGTTTTGACTGCCTGCCCTGCACAGAGGGGGAAATCAGCAACAGTACAGGCTCAATAAAATGTTATCGCTGTCCTAAAGAGTTCTGGTCAAATAGTTACAAAAATGAATGTGTGGCCCGTGAAACTGAGTTTCTCTCTGTTAAAGAAACGATGGGCATCACGCTGATGAGTGTCGCTGTTTCCGGTGCTGTCATGACAACTACAGTAGCTGTGATTTTCCTCTACCACCGGAACACTCCAATAGTAAAAGCCAACAACTCAGAGCTGAGCTTTCTGCTCCTGCTGTCTCTCAAACTATGCTTCCTCTGCGCACTGGTGTTTGTGGGCCAGCCTTCACTCTGGTCATGTAGGATTCAGCAGGCTGCATTTGGGATTAGTTTTGTCCTGTGTATCTCCTGTATTCTGGTCAAGACATTTGTTGTTCTAATTGCATTCCATTCTACTAGACCTGAATCTTCAGCTCTTATCAAATGGTTTGGACTGGGCAAGCAGAGAGGAATTGTGCTGGTGTTTACCTGCGTCCAGGTGGTTATCTGTGCCATTTGGCTCTGTGTCAGTCCACCTTTACCTTACCAAAACTTTGGAATGCACAGATCAAAGGTCATCCTTGAGTGCACAATTGGGTCTGTTGTGGGATTCACTTGTGTACTGGGTTACATTGGCTTTTTGGCGACTGTCTGCTTCCTACTGGCCTTCTTTGCCCGCAAACTTCCAGATAATTTTAATGAGGCAAAATATATTACTTTCAGCATGCTGATCTTCTGTGCTGTCTGGGTTGCATTTGTGCCAGCATATGTTAGCTCGCCAGGAAAGTACAGTGTAGTGGTGGAAGTTTTTGCCATCCTGGCCTCTAGTTTTggacttttgttttgtatttttgtcccaaaatgttacattattttaCTTAAGCCAGAAAACAACACTAAAAAGTTTCTTATGggaaaagaataaatacacatttcagacattttctactttttattcattcattttagtccCTTcctagtcccttcattaatcaggggtcgacacagcggaatgaattgccaacttatccagcatttgttttacgcagcggatacccttccagccgcaacccaacactgggaaacaccctacactcctgcattcacacagatGCACTACAACAAATTTAGTTTATCTAATTtgcctatacagcatgtctttggactttggaagaaatcggagcacccggaggaaacccacacaaacacagtgagaacacacaaactcaacacagaaatgccaactgacccagctggggctcaaaccagtgaactttttgctgtaaggcaatcgtGCTAACCATTGCGCCACCGCGAGGCCTGTtttcttgttttatgttttgataagcttcaattcaatttcattaaattaaaaaatggaaAAGTCCTTTGTAAATTGTTCAttgttaaacaattaaacaaaaatattgtttaatttttagtattgtgatttttttttaaatatttatatttacaaataaatgtataaaaacaattgGTTCAACCAAATATAACAAGCAAGCATTTATGTAGCAAGCAAGCAAGCATTTAAAAATACAAGCATTTTATGTTGTTTCCATGTTATTATGTCATGTTATCTTGGTGGAGCCTTGTGCAGACATTGTATCATTATCTAAAATTTCTCACTTGACACCACAGCTCGTTtacatataaaaagaaaaaaaggggggaacactttataataactgcacactatgaatcatttattaggcactaacaaatagtgaattcattatttgttaagcattacctctacattaatagatataagcagtttttaaatgaatctaCAAATGCAGTATTCTTGGCTTATAAGCACatatgtgcttaatgattgtgttttcttACTCTGTTAATGATaattttttcattactaaataaagtatagtattatttacaaactagttattAAAGGATAGTTCATTCAATAGATCATTCAGAAAGCTGAAGTAAATGATTAACAAGCTATTAAAATTAACATATACATATCTtgttattcaggcatatattaatagttattaatataatgtaagaattgaaatattacaaatatttttgatgtctttgacaattcaaaacatgagctgaaaacagggccaatggactccacaacccaccaggggggaatgcgggaaaaaccagttcctgctgcatttgcatctgagtatgctgaaactcagcttcatccccccaactcacgcatatggtcatttcaatgtttgaatgttctagattaaccaaactgactttaactatcatgtttgatatcatttgaaatgtctcagtgcgattggtacaatggtctcatccTCTCAGAAACAAACATaatcaacacaataaatatataacttcaggcatcttttgaaccactgtgaagggtgtgactttttccttttgttatacacacacacacccccttccttgagggaattcgtggattatttaaggtaaggcttGAAAGACTCGGGgtgattctgcctaaccagatcagcccataacatggggcctgccccatgttatgtatatttcaaagtcaggatatgcatcttttcatcttggatttgtcttAGATAATTTGATGtattgtattgatcatttatgaattgactgattgaattggcataatacatttacctgactaataaattgtaatgtttgaccatattttgctcactctgtaattattaattcaagtagattacgctgtatccttgtttccgcacgtcttgcgtcaggtcagtagacggactaaaatccaattgagatggagcattggcacactaattgtgttttagcgatccggctgactcttgatattgattcatgtgtacttaggtggaaagggcgataacttccgtctaggtcaacaaggtgttgcacgactaacctagattgggtacccgacctttgtttaaaggtaatattattctaaattaagttcatatgggaaaccatgggcttggtgaaaaccaaagttactatagagtccagtagtcgggtacatttatattaatgccctaacctctaattagaaatgatgattgtcttactTAAAGGTGTAcacctaagcgggactaactaaagtattttagaacaagcgcgctggtagcggccatctaaagtattagtcaatttacctcatattcaagactgaccggagtgtgaccgtgagggacgccttcgacCGAGGCGATtactctgagcgacatgagcacccgaatgaacgaatgtaatagttactagtgaagacaaaaggttcaaacatttatctaaattacatattgatataatcttcttaatgttttatgattggagtcagataaaacaaggataaatatattaatattcta
>TCONS_00026639
ATGTCTATACATGTCCTGTCATGGCTCACACTTTCTGTGCCGGTGCTTCTGTTGTGGCCAGTATGTGGATCTGGAACTGAGGTGACTCCGCTGGAAACATGTGTGTACTTGATCACGCCACAGTACTCAGATGAACTTGGTACCTATCAAGACGGTGACGTGATTATTGGTGGTCTCATCAATTTACACAACCTGGCTGCAACTCCAGACCTGAGCTTCACCAGAAAACCTGGATTAGCACAATGCTTAGAcaagaaggtcattggttcgagtcctgacatttctttgtggagtttggcGGATGttcaccgggtgctccggtttcatccactgtccaaagacatgcgctatagGTTTCAGGAACGTACTTACCGCTGGTTTCAGGCAATTGTTTTTACAGTTGAAGAAATTAACCAACATCCCTCACTGTTGCCGGGGGTCAAACTGGGTTATCACATAATGGATAGTTGTTCCCGTTACCCACACAGCCTGACAGCAGCCATGTCAATGATCAGTGGAGGAAACAAAACTTGCGGTCCCACTAAACCAGCCAAGCTTCTGATCGGAGATTCTTCATCTACTCAAAGCATTCTTCTATCCACAACCTTGGTTCCCCTGAAGATTCCAATGATCAGTTACCTGGCTGGCTGCCCATGTCTCAGTGACAGACAAAAGTACCCAAATTTTTTTCGCACTATCCCCAGTGATTTTTATCAGGCACGCACCATGGTACAGATTGCCAAACGCTTTGGGTGGACCTGGATTGGAGCCGTGATTGCAGATAGTGACAATGGGCACGGGACTTTGCAGGCGCTTGAAGAAGAAATTAAAGGCACTGGGATCTGCTTGGCCTTTTATCATACACTCTACAGGGAGCGGTTACAAAAGGACGTGGCCTTTGCTGCCAGAACAGTCCAAGCCTCCTCTGCTCGAGTGATCCTGGTTTTGGCTTGGTATACAGATGTGGAGGCATTTCTGTTGGAATTGATGCGTAGGAATGTGACAGATAGGCTGTTCCTGGCCAGTGAGATCTGGAGCACCAGTTACAATATCATGGCTAATCCCCAGCTCTATACCATCTCTAAGGGAACTTTAGGTGTAGCTTTAAGAAGTGCACCCATACCTGGCTTCAGTGCACATCTTCAGCAGTTACATCCTTCCCGTTATCCTGAGGATAAATTCTTAAGGACCCTTTGGGAAAATACATTTGGTTGTAGTCCTACAATAAGCTCTTCCAAGATTATCCAGAATTCCTTGCCTCCATGCAGTGGCAGAGAGAGTCTAGAGGGTCACATTGAATTTATTGATACATCTCATCTGACAGtttcatataatatttatttggCTGTTTATGCTGCTGCTCACGCACTTCATTCATTGCTGGAGTGTAACTCACAAAATCACACCGattcaaaaataaaaccaaagtgCTCCTCTCCAGACAACATCACACCAGCGCAGCTTTTACAGCATGTTAAAGACGTTCAATACACCACTCAGTTAGGAGAGGAGTTCTATTTCCTGGAAGGTGGCATTCCACCAGTCTATGACTTGGTGAACTGGCAGATAGCTCCTGATGGTTCACTCCAATATGCTTTTATTGGACATGTGGATGGGAACCAGCTCAGTATTAATGACTCAGCTATCACATGGCCTGGAGATTCTGGCAAGGTTCCAATATCTGTGTGCACGTCTGAGTGTCCTCCAGGCACACGTAAAGCCATTAAGAAGGGTCTTCCAGTGTGCTGTTTTGACTGCCTGCCCTGCACAGAGGGGGAAATCAGCAACAGTACAGGCTCAATAAAATGTTATCGCTGTCCTAAAGAGTTCTGGTCAAATAGTTACAAAAATGAATGTGTGGCCCGTGAAACTGAGTTTCTCTCTGTTAAAGAAACGATGGGCATCACGCTGATGAGTGTCGCTGTTTCCGGTGCTGTCATGACAACTACAGTAGCTGTGATTTTCCTCTACCACCGGAACACTCCAATAGTAAAAGCCAACAACTCAGAGCTGAGCTTTCTGCTCCTGCTGTCTCTCAAACTATGCTTCCTCTGCGCACTGGTGTTTGTGGGCCAGCCTTCACTCTGGTCATGTAGGATTCAGCAGGCTGCATTTGGGATTAGTTTTGTCCTGTGTATCTCCTGTATTCTGGTCAAGACATTTGTTGTTCTAATTGCATTCCATTCTACTAGACCTGAATCTTCAGCTCTTATCAAATGGTTTGGACTGGGCAAGCAGAGAGGAATTGTGCTGGTGTTTACCTGCGTCCAGGTGGTTATCTGTGCCATTTGGCTCTGTGTCAGTCCACCTTTACCTTACCAAAACTTTGGAATGCACAGATCAAAGGTCATCCTTGAGTGCACAATTGGGTCTGTTGTGGGATTCACTTGTGTACTGGGTTACATTGGCTTTTTGGCGACTGTCTGCTTCCTACTGGCCTTCTTTGCCCGCAAACTTCCAGATAATTTTAATGAGGCAAAATATATTACTTTCAGCATGCTGATCTTCTGTGCTGTCTGGGTTGCATTTGTGCCAGCATATGTTAGCTCGCCAGGAAAGTACAGTGTAGTGGTGGAAGTTTTTGCCATCCTGGCCTCTAGTTTTggacttttgttttgtatttttgtcccaaaatgttacattattttaCTTAAGCCAGAAAACAACACTAAAAAGTTTCTTATGggaaaagaataa
>TCONS_00026640
TAGAACTGTGCAAATGTCTATACATGTCCTGTCATGGCTCACACTTTCTGTGCCGGTGCTTCTGTTGTGGCCAGTATGTGGATCTGGAACTGAGGTGACTCCGCTGGAAACATGTGTGTACTTGATCACGCCACAGTACTCAGATGAACTTGGTACCTATCAAGACGGTGACGTGATTATTGGTGGTCTCATCAATTTACACAACCTGGCTGCAACTCCAGACCTGAGCTTCACCAGAAAACCTGGATTAGCACAATGCTTAGACCTGACAGCAGCCATGTCAATGATCAGTGGAGGAAACAAAACTTGCGGTCCCACTAAACCAGCCAAGCTTCTGATCGGAGATTCTTCATCTACTCAAAGCATTCTTCTATCCACAACCTTGGTTCCCCTGAAGATTCCAATGCTTTTACAGCATGTTAAAGACGTTCAATACACCACTCAGTTAGGAGAGGAGTTCTATTTCCTGGAAGGTGGCATTCCACCAGTCTATGACTTGGTGAACTGGCAGATAGCTCCTGATGGTTCACTCCAATATGCTTTTATTGGACATGTGGATGGGAACCAGCTCAGTATTAATGACTCAGCTATCACATGGCCTGGAGATTCTGGCAAGGTTCCAATATCTGTGTGCACGTCTGAGTGTCCTCCAGGCACACGTAAAGCCATTAAGAAGGGTCTTCCAGTGTGCTGTTTTGACTGCCTGCCCTGCACAGAGGGGGAAATCAGCAACAGTACAGGCTCAATAAAATGTTATCGCTGTCCTAAAGAGTTCTGGTCAAATAGTTACAAAAATGAATGTGTGGCCCGTGAAACTGAGTTTCTCTCTGTTAAAGAAACGATGGGCATCACGCTGATGAGTGTCGCTGTTTCCGGTGCTGTCATGACAACTACAGTAGCTGTGATTTTCCTCTACCACCGGAACACTCCAATAGTAAAAGCCAACAACTCAGAGCTGAGCTTTCTGCTCCTGCTGTCTCTCAAACTATGCTTCCTCTGCGCACTGGTGTTTGTGGGCCAGCCTTCACTCTGGTCATGTAGGATTCAGCAGGCTGCATTTGGGATTAGTTTTGTCCTGTGTATCTCCTGTATTCTGGTCAAGACATTTGTTGTTCTAATTGCATTCCATTCTACTAGACCTGAATCTTCAGCTCTTATCAAATGGTTTGGACTGGGCAAGCAGAGAGGAATTGTGCTGGTGTTTACCTGCGTCCAGGTGGTTATCTGTGCCATTTGGCTCTGTGTCAGTCCACCTTTACCTTACCAAAACTTTGGAATGCACAGATCAAAGGTCATCCTTGAGTGCACAATTGGGTCTGTTGTGGGATTCACTTGTGTACTGGGTTACATTGGCTTTTTGGCGACTGTCTGCTTCCTACTGGCCTTCTTTGCCCGCAAACTTCCAGATAATTTTAATGAGGCAAAATATATTACTTTCAGCATGCTGATCTTCTGTGCTGTCTGGGTTGCATTTGTGCCAGCATATGTTAGCTCGCCAGGAAAGTACAGTGTAGTGGTGGAAGTTTTTGCCATCCTGGCCTCTAGTTTTggacttttgttttgtatttttgtcccaaaatgttacattattttaCTTAAGCCAGAAAACAACACTAAAAAGTTTCTTATGggaaaagaataa

Function

symbol description
olfcr1 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-302 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000053036

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026638 False 5312 mRNA 0.40 6 33970385 33979693
TCONS_00026639 False 2697 mRNA 0.45 7 33972831 33979422
TCONS_00026640 True 1642 mRNA 0.45 5 33972831 33979435

Neighbor

gene id symbol gene type direction distance location
XLOC_013522 NA coding downstream 20526 33946342 ~ 33949859 (-)
XLOC_013521 NA coding downstream 173773 33782464 ~ 33796612 (-)
XLOC_013520 CU463109.1 coding downstream 235135 33714357 ~ 33735250 (-)
XLOC_013519 olfcu1 coding downstream 632682 33333411 ~ 33337703 (-)
XLOC_013518 olfcx3 coding downstream 716346 33248996 ~ 33254039 (-)
XLOC_013524 plch1 coding upstream 1781 33981474 ~ 34143189 (-)
XLOC_013525 C18H3orf33 coding upstream 166314 34146007 ~ 34156792 (-)
XLOC_013526 slc33a1 coding upstream 178485 34158178 ~ 34171280 (-)
XLOC_013527 NA coding upstream 247659 34227352 ~ 34227899 (-)
XLOC_013528 ssr3 coding upstream 562832 34542525 ~ 34549758 (-)
XLOC_013384 BX323829.1 misc downstream 14428154 19542102 ~ 19542231 (-)
XLOC_013514 NA non-coding downstream 922941 33042762 ~ 33047444 (-)
XLOC_013513 NA non-coding downstream 930528 33037834 ~ 33039857 (-)
XLOC_013529 NA non-coding upstream 571835 34551528 ~ 34554617 (-)
XLOC_013530 NA non-coding upstream 906547 34886240 ~ 34888072 (-)
XLOC_013531 NA non-coding upstream 1271605 35251298 ~ 35254022 (-)
XLOC_013536 CU138549.1 non-coding upstream 1593488 35573181 ~ 35573295 (-)

Expression


Co-expression Network