XLOC_013525 (C18H3orf33)


Basic Information

Item Value
gene id XLOC_013525
gene name C18H3orf33
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 34146007 ~ 34156792 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026643
tcccTCTGTAAACAACATGCCGTCAGTTCCTGCAGATAATACAGACGATGCTAAACCCTCCAAAAATTTTGTTGCACTTTTATCAAACTTTGCTGACGATCATTTAACAGTTGTCCGGAGCATCAGCACATGTATTGGTCTCGCGGGGCTTCTCATAGTAGCCAGGAGCATCAGACtgATGACCAAATTCGGCTCCGGCACTGATATTCCAGCACGGTTCATTGAGAGGAATATCATTATTAGAGGACGACTGAGAAATATCACAGAAAAAGGGCTTGAAGTGGAACACATTCCGATTTCTGTCCCTTTACTCAGTCGCCTGCTTGCTAAACGTCAGACTGAAGCCCTCCTGGATGTGCGTTTGGCTGGGGTGGAGTTGACCTCTGAAGGGCACCACTGGATCGGTCAACAGCTGAGACCCGCTGAGACAGTTTGGCTCCGACTGATCGCTCGACAGAACGAGACCCTTCACTGCCTAGTGTCAGTTAACAAGGGGTCCCTCTTTAACACTTGTGTAAATGAGGAACTTTTAAGGCTTGGTTTGGCTAGGACGTCTCCTCTTGTGGTTCTGGACCCTCACTCTCAGATTTACTGGAGTCTCTATAAGCGCTTACTTCGCGCTGAAAGCAAAGCTGAGAAAAAAGGAAAAGGCCTTTGGAAGGAAGAGAGTCGCTGGGAGAGATTTACTGATGTCTTGAGGAACAATATGCTGCTTGTCTCACTTAAGAAACTCTTCAAATGGAGATCTGGTACTAAAGAAAAGTGAAACATTCCATTTTCCATGTTGGTGATTTGTTtgatgttattaaatatttactttaaatcaGACTGATCTCAGACATAATTTCAAGAATTAAGGGAGGGAGCACGATTAAACATGTCCATCCGAGAATGTAAATGTCCATGTGTTATTCTGCTTACTGACACTTGTAAAGAATCTCCCCTTCGTGTCTTGCTCATGAAGACAGACTGTCTTTACCCCTGCTGTAATGGTTGTAGCATTCTATAATCCATCACGTTATTCATGCTGTCCTACACCTGTAGTGTCGGACCCTGTCATCATACTCCTGACAACCGGAAAGCCTTTGTACTCTGCCCTCCTCCCATAAATCCATATCCTACAGACCTCTCGGTTTTCTCTTTCCCTGGGGAGATGGGGGAGtgctttgtcatgatgacatggCAGTGGGGGTCTACCAATGCCCCTGTGGAGATCCCCATTACTATAGAAACATCACAGTCTGAAGACAAAGTGTATCAGGGGGGCATTTCTCAGGGTCCTAAAAGCCATAGTGCTTGTAGAGCACACAACAGAGACTACGAGAGGGGGGAAATGCTTGAATACAATAACTATTGTAGTTCAGAACATTGTTTTCAACTAATATTATGTGGGGTCTAAAAaactcaaaaatgcaaaaataatttaattattaaaaatgttacatcATGCATGTGAATTGTAAATTGGTATTCAGAACGTTGTAGAATCTATGCAGATGCTATTTTTCTCTACTAAGTAGAGccaacttaatagttttagtcattttcacctATCTATGTGACTAGGGAGGAGAAACACAAGAGAAAAGTTTTTCCAGTTGTGTACATTGCTGTGGTGTAAATGTACTCTGTGTTTGCTTACATTGTCTGTAAAAAAACACAGCAttccaaaaaaacattttatttgtttcacATGATTTTATTGCGATTTCATGAGGGAAAATAAAGATAACTGAAGCACATTTTA
>TCONS_00026979
GGGCGGAGTttcattttgtagtttttttcccTCTGTAAACAACATGCCGTCAGTTCCTGCAGATAATACAGACGATGCTAAACCCTCCAAAAATTTTGTTGCACTTTTATCAAACTTTGCTGACGATCATTTAACAGTTGTCCGGAGCATCAGCACATGTATTGGTCTCGCGGGGCTTCTCATAGTAGCCAGGAGCATCAGACtgATGACCAAATTCGGCTCCGGCACTGATATTCCAGCACGGTTCATTGAGAGGAATATCATTATTAGAGGACGACTGAGAAATATCACAGAAAAAGGGCTTGAAGTGGAACACATTCCGATTTCTGTCCCTTTACTCAGTCGCCTGCTTGCTAAACGTAAGAACACACACAAGCCCTCATGTGCAGTGCTTCAGAAAGACCCCCGCACACTTTAATTAAATGTCCTACTGGTGGGCCTGTACATTTATTTCACAGCTGTCAGAGGGACCACTGTGTACATCTAAACAGCTGCTCTCAATTAAGTCTTCATCTTTAGAAGCACAAATCTCTTAGAAACAGCTTTTTATCACTCTTCATAATTGTGCTTCTGCTGTGTCAGAAAATGCGGAGAAGGGTTTTTCTTTCGCCGTCGTAGTGACTTTGAACTTGGATTGAAACCCATTGACTTATTAGAGAGTTCTCTCTCTTGTCGTCCTGTTGTTACGCTCCAAACATTGTAAAATGCAGATTCATCTGGTTTCAGTTAAATTAAACTGCTTTTGGTTTTGCAGCAACATTTGCAAATTTACAAGATTTTATTAAAGTCTTTTCAAAT

Function

symbol description
c18h3orf33 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Orthologous to human C3orf33 (chromosome 3 open reading frame 33).

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-061121-2 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Orthologous to human C3orf33 (chromosome 3 open reading frame 33).

Ensembl:

ensembl_id ENSDARG00000040582

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026643 False 1747 mRNA 0.42 5 34146007 34156765
TCONS_00026979 True 798 lncRNA 0.41 3 34151678 34156792

Neighbor

gene id symbol gene type direction distance location
XLOC_013524 plch1 coding downstream 2818 33981474 ~ 34143189 (-)
XLOC_013523 olfcr1 coding downstream 166314 33970385 ~ 33979693 (-)
XLOC_013522 NA coding downstream 196148 33946342 ~ 33949859 (-)
XLOC_013521 NA coding downstream 349395 33782464 ~ 33796612 (-)
XLOC_013520 CU463109.1 coding downstream 410757 33714357 ~ 33735250 (-)
XLOC_013526 slc33a1 coding upstream 1386 34158178 ~ 34171280 (-)
XLOC_013527 NA coding upstream 70560 34227352 ~ 34227899 (-)
XLOC_013528 ssr3 coding upstream 385733 34542525 ~ 34549758 (-)
XLOC_013529 NA coding upstream 394736 34551528 ~ 34554617 (-)
XLOC_013530 NA coding upstream 729448 34886240 ~ 34888072 (-)
XLOC_013384 BX323829.1 misc downstream 14603776 19542102 ~ 19542231 (-)
XLOC_013514 NA non-coding downstream 1098563 33042762 ~ 33047444 (-)
XLOC_013513 NA non-coding downstream 1106150 33037834 ~ 33039857 (-)
XLOC_013531 NA non-coding upstream 1094506 35251298 ~ 35254022 (-)
XLOC_013536 CU138549.1 non-coding upstream 1416389 35573181 ~ 35573295 (-)

Expression


Co-expression Network