G484437


Basic Information

Item Value
gene id G484437
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 5414700 ~ 5415765 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU555880
CTATTCACAAAATCAACATGTTAAAACATCACACCTGTCAACAAACAAACACACGTCCCCAGTCAGAGTACAACTTCAATTTTATTTTAGAATTCATTTTTGACCAAACAGTGGGTTCACCTGACATCTTTAAAAAGCATAAATTCATACATCAACATCCAAAGTACATGATTTTACAGGGACATGCATCAAACAGTGTTTTTGACATCACCATCACCCAAACCAATGCATATATATGATATGATTGAAAGTGCTCTCAGTATCTGAACAACCTGATTTCTGAGGAAATGTTTACAATGTAGTACAAGCTAGAGGATTTATAATTTGTTTTTTTGGGGAAGTGGAGTTGTACAGAGAGATCCATTCTACACTCAAAGAAGCTCTGACAAGAGTGGGAAAGTAAGGATAGCTAGCAGGAGTGCTGCTCCACTGTGCTGCACAACACACCAGGCAGAACAGGCCTGAAGCTACTCTTCTCCACAGTTGCAGAAACTGACCCTGGTGAGGCAGTCTGTTTGATGAAACAAGTGTAGTTTTTGGGTTTGTCATCCGAGAAACCTTTCAATAACAGCTCGCATGTGTTATCGACAATGGAGACATTGGCACGGTTCTTGAAGGTGTTGTCTTGGGGCATGCTGCTGTTGGTACTGGCAATCACCTTATCCTCGGTCTTGTAGTAGCAATTCTTCGGGAGCTTGGGGTCTGGAGCTGGAATGAACTTGCAGTACATCTGCAGGTTTTGATCCTTAGTTATGCAGGATGAAATCTGAAGGGAAGTCTGGCCAGTAGCAACACCTAGAAAATTACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU555880 True 808 lncRNA 0.42 2 5414700 5415765

Neighbor

gene id symbol gene type direction distance location
CI01000339_05387768_05396589 CFAP77 coding downstream 18111 5387695 ~ 5396589 (-)
CI01000339_05381662_05386593 BARHL1, BARHL1A coding downstream 28107 5381290 ~ 5386593 (-)
CI01000339_05329216_05330546 NA coding downstream 84154 5329140 ~ 5330546 (-)
CI01000339_05286494_05309122 GRIN1 coding downstream 105358 5286050 ~ 5309342 (-)
CI01000339_05264265_05270065 ENTPD2A.2, ENTPD2A.1, ENTPD2 coding downstream 144635 5264265 ~ 5270104 (-)
CI01000339_05522752_05535461 NA coding upstream 106968 5522733 ~ 5535665 (-)
CI01000339_05584421_05594083 BCO2A, BCO2 coding upstream 168374 5584139 ~ 5594083 (-)
CI01000339_05595943_05596416 NA coding upstream 179564 5595329 ~ 5596416 (-)
CI01000339_05624136_05625750 NA coding upstream 207955 5623720 ~ 5625750 (-)
CI01000339_05627087_05634310 ZBTB44 coding upstream 211322 5627087 ~ 5634365 (-)
G484459 NA non-coding downstream 1932 5412472 ~ 5412768 (-)
G484458 NA non-coding downstream 9154 5405330 ~ 5405546 (-)
G484452 NA non-coding downstream 24721 5389769 ~ 5389979 (-)
G484436 NA non-coding downstream 53230 5360916 ~ 5361470 (-)
G484460 NA non-coding upstream 9139 5424904 ~ 5425858 (-)
G484467 NA non-coding upstream 67642 5483407 ~ 5486905 (-)
G484524 NA non-coding upstream 115119 5530884 ~ 5531097 (-)
G484492 NA non-coding upstream 122391 5538156 ~ 5543421 (-)
G484394 NA other downstream 140430 5274086 ~ 5274270 (-)
G483481 NA other downstream 561253 4851757 ~ 4853447 (-)
G483512 NA other downstream 795975 4618112 ~ 4618725 (-)
G483509 NA other downstream 801382 4612852 ~ 4613318 (-)
G483285 NA other downstream 1244198 4125258 ~ 4170502 (-)
G484702 NA other upstream 607967 6021828 ~ 6024822 (-)
G484645 NA other upstream 838566 6254331 ~ 6256112 (-)
G484826 NA other upstream 1585128 7000893 ~ 7004773 (-)

Expression


Co-expression Network