G484632


Basic Information

Item Value
gene id G484632
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 6041807 ~ 6044025 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU556102
GTGTCGACATTGTCTGGCTTCAGGGAAAAGTTTGATTTGAAAGGCAAAACCAGAATTTAAAGTATCCATACTAACCCTGACTGTGGTCTGACCGAGCCGTCCTGACTGGAAGCTCTTGAGGAGATCTTGGAAGCCGCTGATGGCCTTGGGGATCTCGGCAGGGGTGGGAGGCACCAGCTCCACACGGGCGTAATACCAGAATGTGGCTAGCCGGGGCTTGGAGTAGTTCACAGCAGGCCGACCAACGTTGGCACTTTAGCCACCAATTTCTGTACCGCCTGGGCCATGATTTCTGTGAACTGTGAAGATTTATTCGCCGCTTCTCTCCACAAACCGGGGCCCTTCAATGAATGTCACCTCCAGCGAAGGACCCTTCAATCGAGCAGGCA
>TU556104
TAATAATATTCATTTATTTAGTTCCTGGATTCCAAGAATTCTGATAAAGAAGGGAACAGACAAAAGCAACGAGAAAAGGCAAACAGGACAGTCCACATTTATACATCATAGCCAATAATGCCTCCCTTCCCAATGATCTCCCCGATGTAGAACCACATCAGAACTTCTGTGGTAACAAGTCCATTCCTCAGAGCATCCCTGACTGTGGTCTGACCGAGCCGTCCTGACTGGAAGCTCTTGAGGAGATCTTGGAAGCCGCTGATGGCCTTGGGGATCTCGGCAGGGGTGGGAGGCACCAGCTCCACACGGGCGTAATACCAGAATGTGGCTAGCCGGGGCTTGGAGTAGTTCACAGCAGCCCGACCAACGTTGGCACTTTAGCCACCAATTTCTGTACCGCCTGGGCCATGATTTCTGTGAACTGTGAAGATTTATTCGCCGCTTCTCTCCACAAACCGGGGCCCTTCAATGAATGTCACCTCCAGCGAAGGACCCTTCAATCGAGCAGGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU556102 False 389 lncRNA 0.53 2 6041807 6042660
TU556104 True 511 lncRNA 0.50 3 6041807 6044025

Neighbor

gene id symbol gene type direction distance location
CI01000339_05987848_05990050 TCNL coding downstream 51729 5987718 ~ 5990078 (-)
CI01000339_05984460_05985628 NA coding downstream 56151 5984331 ~ 5985656 (-)
CI01000339_05935601_05965650 C2CD2L coding downstream 76157 5935360 ~ 5965650 (-)
CI01000339_05932828_05933256 H2AFX, H2AFX.L, HIST1H2AH, HIST1H2AJ coding downstream 108551 5932698 ~ 5933256 (-)
CI01000339_05917956_05923087 ARCN1 coding downstream 117795 5917900 ~ 5924012 (-)
CI01000339_06044422_06045535 IFT22 coding upstream 324 6044349 ~ 6046046 (-)
CI01000339_06049238_06060176 NA coding upstream 5213 6049238 ~ 6060359 (-)
CI01000339_06102824_06169802 SPNS2 coding upstream 58799 6102824 ~ 6169802 (-)
CI01000339_06193430_06204965 SPNS3 coding upstream 149077 6193102 ~ 6205388 (-)
CI01000339_06235679_06237223 CYB5D2 coding upstream 191416 6235441 ~ 6237612 (-)
G484707 NA non-coding downstream 14549 6025003 ~ 6027258 (-)
G484702 NA non-coding downstream 16985 6021828 ~ 6024822 (-)
G484659 NA non-coding downstream 180604 5858808 ~ 5861203 (-)
G484684 NA non-coding downstream 204018 5837573 ~ 5837789 (-)
G484683 NA non-coding downstream 204744 5836826 ~ 5837063 (-)
G484710 NA non-coding upstream 23467 6067492 ~ 6067961 (-)
G484660 NA non-coding upstream 212604 6256629 ~ 6257120 (-)
G484653 NA non-coding upstream 217438 6261463 ~ 6261714 (-)
G484646 NA non-coding upstream 218884 6262909 ~ 6263179 (-)
G484668 NA non-coding upstream 224685 6268710 ~ 6289236 (-)
G484394 NA other downstream 767537 5274086 ~ 5274270 (-)
G483481 NA other downstream 1188360 4851757 ~ 4853447 (-)
G483512 NA other downstream 1423082 4618112 ~ 4618725 (-)
G483509 NA other downstream 1428489 4612852 ~ 4613318 (-)
G484645 NA other upstream 210306 6254331 ~ 6256112 (-)
G484826 NA other upstream 956868 7000893 ~ 7004773 (-)

Expression


Co-expression Network