Gene
RNA
| Item | Value |
|---|---|
| gene id | G484645 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000339 |
| NCBI id | null |
| chromosome length | 8057057 |
| location | 6254331 ~ 6256112 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU556119 | True | 419 | TUCP | 0.53 | 3 | 6254331 | 6256112 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000339_06235679_06237223 | CYB5D2 | coding | downstream | 16719 | 6235441 ~ 6237612 (-) |
| CI01000339_06193430_06204965 | SPNS3 | coding | downstream | 48943 | 6193102 ~ 6205388 (-) |
| CI01000339_06102824_06169802 | SPNS2 | coding | downstream | 84529 | 6102824 ~ 6169802 (-) |
| CI01000339_06049238_06060176 | NA | coding | downstream | 193972 | 6049238 ~ 6060359 (-) |
| CI01000339_06044422_06045535 | IFT22 | coding | downstream | 208285 | 6044349 ~ 6046046 (-) |
| CI01000339_06486384_06493464 | NA | coding | upstream | 230272 | 6486384 ~ 6493872 (-) |
| CI01000339_06598910_06604125 | NA | coding | upstream | 342074 | 6598186 ~ 6605212 (-) |
| CI01000339_06621327_06638963 | NA | coding | upstream | 365195 | 6621307 ~ 6638963 (-) |
| CI01000339_06644384_06653741 | PIP5KL1 | coding | upstream | 387655 | 6643767 ~ 6653741 (-) |
| CI01000339_06655858_06658182 | DPM2 | coding | upstream | 399609 | 6655294 ~ 6658182 (-) |
| G484710 | NA | non-coding | downstream | 186370 | 6067492 ~ 6067961 (-) |
| G484632 | NA | non-coding | downstream | 210306 | 6041807 ~ 6044025 (-) |
| G484707 | NA | non-coding | downstream | 227073 | 6025003 ~ 6027258 (-) |
| G484702 | NA | non-coding | downstream | 229509 | 6021828 ~ 6024822 (-) |
| G484659 | NA | non-coding | downstream | 393128 | 5858808 ~ 5861203 (-) |
| G484660 | NA | non-coding | upstream | 517 | 6256629 ~ 6257120 (-) |
| G484653 | NA | non-coding | upstream | 5351 | 6261463 ~ 6261714 (-) |
| G484646 | NA | non-coding | upstream | 6797 | 6262909 ~ 6263179 (-) |
| G484668 | NA | non-coding | upstream | 12598 | 6268710 ~ 6289236 (-) |
| G484742 | NA | non-coding | upstream | 34773 | 6290885 ~ 6291193 (-) |
| G484394 | NA | other | downstream | 980061 | 5274086 ~ 5274270 (-) |
| G483481 | NA | other | downstream | 1400884 | 4851757 ~ 4853447 (-) |
| G483512 | NA | other | downstream | 1635606 | 4618112 ~ 4618725 (-) |
| G483509 | NA | other | downstream | 1641013 | 4612852 ~ 4613318 (-) |
| G484826 | NA | other | upstream | 744781 | 7000893 ~ 7004773 (-) |
