G484668


Basic Information

Item Value
gene id G484668
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 6268710 ~ 6289236 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU556142
TTGCTATTGTAAAAATCCATAGGAAATTCTTGGAAAATGCTAATTCTCTTTCAAGCATTAATACTACAAACTGAACAGTTCAATTCTATACTCCTGCATTCGTCTAGCGCGAGCCCTTATTCCTGCATAACACGACACCGAGCCAAAACACAAATCATCTGGTGTGAAAGCACCATTAATCCGGACTCATCTTCAGCGAAGCCTGAATCACAGCCACCCACCCCCTCTCGAAAACCAGCACATCTACAGATTATCAGTTACTCCGTTTTTCACTTCACTCTCTCTCTTTTCCCCTTCTCCCTTTTTCCCATATCAGAGGTGTAGGTGTGAAGAGCAAGTTTCACGCCATCCCGGTGTCACAGGCTATTTATACTTCTTCAAACCCACTGCCTCACATCCCCACCGGATGATTTCATCATCATCATCATCATCTCCCCCTCTGCAGTCGCAGCTGTAGGGTCTCACTGCTGGTGTCCAGCTCGTGGGAAGCACAATCACCACCACCACCACCATCACCAGTGACACGTCCGTCATTCAGCGTTTCTGTGAATGGAGAGAAAGAAGGAGGCAGAGAGAAACGCTGGTGGTACTATGAGGAATCTCAAAATCCGTCCATTTCTGGTGAGAACCACTGAAAGTGTGCAGGTCCTGAAGGAAGTCACTACTGCTGGCCATCAGGAGCTCGTCACATCCTTCCTCTGTGTGACAGCGTGAGTCGAACTTCACAGACAGGAATATCGCTCCAGGGATGTGCACCTTATCCTGAGACAATGCAAAGAATGACACTGAGTGGACCAGAGAGACTCAATCATGATCAAGTGAAATTTGAGTAAAAAAAAAAAAATGGAATTCATACCTCAAAGTTAGTGTTGTTGTCGTAGGGATGCTTGGATTCACGGACCTGCACGGCCATCCCAGGCTCCTCCATAAACTGACATGCTGTCAGTGAAAGATTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU556142 True 957 lncRNA 0.47 3 6268710 6289236

Neighbor

gene id symbol gene type direction distance location
CI01000339_06235679_06237223 CYB5D2 coding downstream 31098 6235441 ~ 6237612 (-)
CI01000339_06193430_06204965 SPNS3 coding downstream 63322 6193102 ~ 6205388 (-)
CI01000339_06102824_06169802 SPNS2 coding downstream 98908 6102824 ~ 6169802 (-)
CI01000339_06049238_06060176 NA coding downstream 208351 6049238 ~ 6060359 (-)
CI01000339_06044422_06045535 IFT22 coding downstream 222664 6044349 ~ 6046046 (-)
CI01000339_06486384_06493464 NA coding upstream 197148 6486384 ~ 6493872 (-)
CI01000339_06598910_06604125 NA coding upstream 308950 6598186 ~ 6605212 (-)
CI01000339_06621327_06638963 NA coding upstream 332071 6621307 ~ 6638963 (-)
CI01000339_06644384_06653741 PIP5KL1 coding upstream 354531 6643767 ~ 6653741 (-)
CI01000339_06655858_06658182 DPM2 coding upstream 366485 6655294 ~ 6658182 (-)
G484646 NA non-coding downstream 5531 6262909 ~ 6263179 (-)
G484653 NA non-coding downstream 6996 6261463 ~ 6261714 (-)
G484660 NA non-coding downstream 11590 6256629 ~ 6257120 (-)
G484710 NA non-coding downstream 200749 6067492 ~ 6067961 (-)
G484632 NA non-coding downstream 224685 6041807 ~ 6044025 (-)
G484742 NA non-coding upstream 1649 6290885 ~ 6291193 (-)
G484772 NA non-coding upstream 59731 6348967 ~ 6353038 (-)
G484789 NA non-coding upstream 143392 6432628 ~ 6434113 (-)
G484641 NA non-coding upstream 181619 6470855 ~ 6472519 (-)
G484801 NA non-coding upstream 195386 6484622 ~ 6484856 (-)
G484645 NA other downstream 12598 6254331 ~ 6256112 (-)
G484702 NA other downstream 243888 6021828 ~ 6024822 (-)
G484394 NA other downstream 994440 5274086 ~ 5274270 (-)
G483481 NA other downstream 1415263 4851757 ~ 4853447 (-)
G483512 NA other downstream 1649985 4618112 ~ 4618725 (-)
G484826 NA other upstream 711657 7000893 ~ 7004773 (-)

Expression


Co-expression Network