XLOC_013534 (itpkcb)


Basic Information

Item Value
gene id XLOC_013534
gene name itpkcb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 35429333 ~ 35459996 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026653
GCCAGACTTTCTTGTAGACTTTAGCTGCTCTTCTCCCTTAGCCGTTCATAAAATGACCAAAAGTACGTTAAAATCTCCCGTGTCGGGTCGGCAGAGTGGAGAAGTGGAGCAACAAGCCACAAGCCCGTGCCCTAGGATTATTCCCAAACTAATAGTGACCCACGATGATCTATGTGGCGGTCAGGACTGTCCTCGCATTAGTGATTTGACTCTGAGCACTGGCGGCTTTTCGCTGGATCTGCATCCAGATGAGGACTCGCCCTGCTCGGACAGCGGCTGTGGAGGCTCCCCTGCGCCCTCTCTGTTCCACAGGAAACTGTCCAGCTCTTCCTCTGCTGGATTATCATCTGCCTCGTCCTTTGAGGAGTCTGAAGATGATTTTACAGGCAGTGATATCGAACCCACCAGTCTGTCCCCCAGTATGTTCGCAAGTCCCGATGAACTAACAGGGGCAAAATCGTGGAGGAAGTTAAAGAGCATGGTGCACTGCTCTCCGTTTGTGGTTTCCTTTAAGAAACGATATCCTTGGGTTCAGCTGGCAGGACACGCAGgAAGTTTCCAGGCAGGAGAGAACGGGAAGCTGTTGAAGAAGTATTGTGAATGTGAGCAGCAGTGTCTGGAGAAGCTGATGAATGATGACCTTCGGCCATTTGTACCCGGTTATTATGGTGTGGTTCAGCAGAACGAGCAGGATTACAACATAATGGATGATCTGCTCAAAGACTTTGACTCTCCTTCAATCATGGACTGCAAAATGGGAAGCAGGACATACCTGGAGGAAGAGCTGGTAAAGGCCCGTGAGCGTCCTCGGCTCAGAAAGGACATGTATGAGAAAATGGTGGCTGTTGACCCAACCGCTCCTAGTCCAGAGGAAAGATCCCAGCAGGCTGTTCTCAAACCTCGATACATGCAGTGGAGAGAAACTCTGAGCTCCACTGCCACACTCGGCTTCCGCATAGAGGGAATCAAGAAAGCAGATGGAACATGCAACACCAGCTTTAAGAAAACCAAACATGAAGAGCAAGTAATGAAGGCCTTCGGAGACTTTGTGGATGGAAACACAAACTTACTGaggaATTATCTTCTTAGGCTGGAAGAGCTGCGCTGCGCTCTGGAAAACTCACACTTCTTCAGGACACATGAGGTTGTTGGAAGTTCTCTTCTGTTCGTTCATGATGCTTCAGGCCTGGCCCGAGTCTGGATGATTGATTTCGGTAAGACCGTTCCACTGCCACCACCCCAAATCCTGGACCACCGCACACCCTGGGCTGAGGGAAACCGAGAGGACGGCTACCTGTGGGGTCTGGACAACCTCATTCACATCTTTACCAACATGCTGAAGGACGATGACAGATTCACAAACACACCGCGGGAAGAAGCATCACGTGTTGGGCGCTTGTTGATGGAAGAGTCTTCCTTCTAATAGGAGGCGCTCAACAGGATATCAGTCCCGAGATTAAATGCGAACAAAACATGAGTGGGACAAAAGCGGAGCTCAGTCTGTTGTTGTTCATTCCTCTGAGACACATGTGATTCACAATAAACACTGATACTGAGACCAAATGAACAGCGATGAGCAACAGATGACCGCTTTTTCTTTTAAAGGTGCACAGCCATGACTGTTCTTTTAAgaatattaactttatttttctttcgacttcttttttacatttttatttgacctACAGGTATATTGATAACACTATCATACTGGAATGCGCTTTTggtttgttgttggttttttggggggatgtttttcttttctgtggttatgtaaatagcaaacacttatttaatttgtttttaggaTCATTTAGACTTGTCctttgattttacttttatttctgtaATCTAACTAGTACCTCATTttgttaaaggcatagttcatccattttcttttaaattctgtcatcatttactcaccctttacttgctccaaacctgtttgaaatcctttttttgttgttgtttaacacaaaagaagatattctgaagaatattgaaaacctgtaaccatcgactatTTGATTTTtcttctatggaagtcagtgatttCACTATTCTCGAAAATATCTTCTGTAAGGTTCAACAGAATACAGAAACGTAAATGTTTGGATCCACCTGAGGTCGAGTAAATAGTAATTAAATATAGTTTTTGaggtgtgaactaaccctttaacagcGGTTTAACTGCCAGACTACAGGCAGATTGCCGCTTATCTATTTTCTTGTGGTTTTCTAATCTTGATGATGCATGTTGTTTATATTTCCATTACTCATATGTCCTGTTGAATGTTTGCAGACCAATTCCGCCTTTTAGACCATTCAGTCTTTATAGCAGAATTCGAATTGCTATTAGACATTTAACAGATTAGCTAGGTAGATACATGTAAGCATTTTTGCACTTCACTAACCCCCTGTAACCATTCCATTGTTCAGCTTTGCCAAAATGGTATTTACTGATGAGAAATAGATTCAGTATTTCTTAAAACTTGCCGCAGTTACAAAGATAGAAGCTAACATGTTGTTATATTCACATCTTGATGGAATAATTTAATCTCACgctgtttttaaagggatagttcaaccaaatatTCCAGTGTGTCCATTGAACGCAAAatagagatattttgaagaatgttgaaaatgttttgactgctgtagtattttattttatcgcactatggatgtcaatagcttAACAAATTAATGttcattttggatgaactatctttTAGTTAGCAAGTTTGACTAAGCTGTTCAGTTTCTTGTGTGTGTGCAAGATTAAAAGGCGTTTGGCAGATTAACCTTCTTAATCTCTATCATCAACTTgattattttctctctttttttttagaaGATTTGTGAGGTTTCTATTGGTATACAGCAAAAGGAACTACATTTCTATGTGATGGCGCTCATCAAGAACAAAACTGAGATGGTTAAACTCTCAAACTTTGATTGAAAATGTCAATATTTTGCAGATTATAAGTGTTATGGCTACTGATGTCAGGTTGTTGACAGGATGCATTAGTTCTCAAATTGGCCACTGTGGTCAGCTTACCCAGAAAAAGACCAACAACTTTTTCCGTCATCACTTCATGTTTGCTTCAGCCTGTATCTCTGaaatatttcattataaagccAAGATAACATTCTCCTCAAACTCGTGATATTAAAGTGATTACTTCACCTGGGCGAGTTAACGTTAGTTTATGGAACATaatgttctgtgtgtgtgcgcatgtgtgtgtttatcttcAGAGATTGTATTTTCTGTCTCGATGGGACCTGCACACTGTCTGTTGGTGTGTCTGTCAACATTCCAGCACATTCCATCTGTCAGTATTTCTCCTTCTGACTGTGGAAACACTGAACACAATGTCTCACACGGCCTCGTTTACAATTGTGTAAAGTATTATGTTTCATTCACATTGTTGAAATGATTTCCCAAATACCGTTTGGCATGTTTTAGATGACGTTTTATGTTGGAATGAGAACTGGATGGTGTTTTGAGTTGTTTTAGCCCATTTGAATACAGATTGGGACCGTTTATTTGCAACAGGCACATTCTGAAGATTTGTACTCGCATCAACTTGATTGATTGTTGTCTTGAAAGCCAATACAATAAACTGGAACTGTTATTGTTTAATGTTCTATA
>TCONS_00026654
GATATCGAACCCACCAGTCTGTCCCCCAGTATGTTCGCAAGTCCCGATGAACTAACAGGGGCAAAATCGTGGAGGAAGTTAAAGAGCATGGTGCACTGCTCTCCGTTTGTGGTTTCCTTTAAGAAACGATATCCTTGGGTTCAGCTGGCAGGACACGCAGgAAGTTTCCAGGCAGGAGAGAACGGGAAGCTGTTGAAGAAGTATTGTGAATGTGAGCAGCAGTGTCTGGAGAAGCTGATGAATGATGACCTTCGGCCATTTGTACCCGGTTATTATGGTGTGGTTCAGCAGAACGAGCAGGATTACAACATAATGGATGATCTGCTCAAAGACTTTGACTCTCCTTCAATCATGGACTGCAAAATGGGAAGCAGGACATACCTGGAGGAAGAGCTGGTAAAGGCCCGTGAGCGTCCTCGGCTCAGAAAGGACATGTATGAGAAAATGGTGGCTGTTGACCCAACCGCTCCTAGTCCAGAGGAAAGATCCCAGCAGGCTGTTCTCAAACCTCGATACATGCAGTGGAGAGAAACTCTGAGCTCCACTGCCACACTCGGCTTCCGCATAGAGGGAATCAAGAAAGCAGATGGAACATGCAACACCAGCTTTAAGAAAACCAAACATGAAGAGCAAGTAATGAAGGCCTTCGGAGACTTTGTGGATGGAAACACAAACTTACTGaggaATTATCTTCTTAGGCTGGAAGAGCTGCGCTGCGCTCTGGAAAACTCACACTTCTTCAGGACACATGAGGTGAGGGATTGTGTAATCTTGTCCTGCCTGAGCCAAATTCTTTCAACTCTGGAACATCATAAATCATGTTTCGTAAGCTCAGATGTTTGTCCGGTTAATGTACATTTTAAGAAAAGTACAAAGTGTTCTAAGCATACTGTATGCTACTGTTAATACCCACTTAATGTTGTAAAAAACAGTATC

Function

symbol description
itpkcb Predicted to enable inositol hexakisphosphate kinase activity. Predicted to be involved in inositol phosphate biosynthetic process and phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in hatching gland; nervous system; neural crest; otic vesicle; and somite. Orthologous to human ITPKC (inositol-trisphosphate 3-kinase C).

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0032958 inositol phosphate biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000828 inositol hexakisphosphate kinase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080225-27 Predicted to enable inositol hexakisphosphate kinase activity. Predicted to be involved in inositol phosphate biosynthetic process and phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in hatching gland; nervous system; neural crest; otic vesicle; and somite. Orthologous to human ITPKC (inositol-trisphosphate 3-kinase C).

Ensembl:

ensembl_id ENSDARG00000067741

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026653 False 3661 mRNA 0.41 7 35429333 35459996
TCONS_00026654 True 936 mRNA 0.46 6 35435226 35459605

Neighbor

gene id symbol gene type direction distance location
XLOC_013533 snrpa coding downstream 21543 35402759 ~ 35407790 (-)
XLOC_013532 CABZ01040999.1 coding downstream 38598 35375229 ~ 35390735 (-)
XLOC_013531 NA coding downstream 175311 35251298 ~ 35254022 (-)
XLOC_013530 NA coding downstream 541261 34886240 ~ 34888072 (-)
XLOC_013529 NA coding downstream 874716 34551528 ~ 34554617 (-)
XLOC_013535 ryr1b coding upstream 31477 35491473 ~ 35736591 (-)
XLOC_013536 CU138549.1 coding upstream 113185 35573181 ~ 35573295 (-)
XLOC_013537 hnrnpul1 coding upstream 347592 35807588 ~ 35837673 (-)
XLOC_013538 opa3 coding upstream 378756 35838752 ~ 35842554 (-)
XLOC_013539 exosc5 coding upstream 600299 36060295 ~ 36066087 (-)
XLOC_013384 BX323829.1 misc downstream 15887102 19542102 ~ 19542231 (-)
XLOC_013527 NA non-coding downstream 1201434 34227352 ~ 34227899 (-)
XLOC_013522 NA non-coding downstream 1479474 33946342 ~ 33949859 (-)
XLOC_013541 BX950224.1 non-coding upstream 995311 36455307 ~ 36465466 (-)
XLOC_013542 NA non-coding upstream 1254643 36714639 ~ 36733902 (-)
XLOC_013543 NA non-coding upstream 1389153 36849149 ~ 36887469 (-)
XLOC_013544 NA non-coding upstream 1442025 36902021 ~ 36918987 (-)

Expression


Co-expression Network