G485011


Basic Information

Item Value
gene id G485011
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 7267969 ~ 7270942 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU556558
CTCCACTTTATCTATGTCTGATTCAATCTCCCAAAGTTCTGAGAGGAGTTTCATGGTGATACTCTTGATGGTGTTTTGGAGAATCCCGCACACTATGTGTCCACTGTAAGACTCCTGTGGATCAAACTCTGTCTTGAGAGACTGAAACACTCCATTCATCACTCGCTTCACCTGAACCGCCAACTGGTTCTCAAACTGCTTTTTCTTATTTTCTGATGTCTTCTTTAAATCCTCATACTGATCCAGATTCTCATTTTCAGCCCTCAGATCTTGCATCTCCTCATCCATGTTTTGTATAATTGTTTCCATTTCTTTGCACTTCTGCTTCTCTGCCCTCCACCGCTGCTCAGACTGTTCTCCTTGCTTCACAAGCTCTTCCACTTGTTTCTCCAGAAGGCTGATCTGAGCACAGTGGTTGTGTTTGTCCTCCAGGGCCGCACTGAGATCAGTCTGAATCTTTGTCACCCTCTGCTGGAGATTCACCATTTCCTGCTGCAGCTGATATGCTTGTGTGGTGGAGGAACTCAATTCCTCGGATAAATGAACCTTTTCCTGATCATCCTGAAGGCGGCGAGTCTGAGTATGTCGCTGCTCCATATTCCTCTTATTCTGTCCACTCAGCTCCCCTATTTTGTGGTTCTGTTCCTCCACCTGAGAACTCTTCTCCAAAACCTCCTTCTTCAGACACATGTTCTCCTGAATGATTCTCTGAATGTTGTGCAGGATCTTGTTTGTTTCTAAGGAGACAGAGGAGAGTCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU556558 True 760 lncRNA 0.45 8 7267969 7270942

Neighbor

gene id symbol gene type direction distance location
CI01000339_07241105_07251176 PTPA, PPP2R4 coding downstream 16793 7241094 ~ 7251176 (-)
CI01000339_07082365_07085238 NTMT1 coding downstream 182600 7081556 ~ 7085369 (-)
CI01000339_07062220_07073959 NA coding downstream 194010 7060881 ~ 7073959 (-)
CI01000339_07035942_07039033 MGC78985, NCS1A, NCS1B, NCS1.L, NCS1 coding downstream 228936 7035942 ~ 7039033 (-)
CI01000339_07023718_07029434 FBXW2 coding downstream 238535 7022252 ~ 7029434 (-)
CI01000339_07277428_07288530 LRSAM1 coding upstream 6326 7277268 ~ 7288530 (-)
CI01000339_07293147_07293732 POLE3 coding upstream 21645 7292587 ~ 7294846 (-)
CI01000339_07323037_07323778 NA coding upstream 51722 7322664 ~ 7324233 (-)
CI01000339_07331830_07342029 NA coding upstream 60611 7331553 ~ 7342219 (-)
CI01000339_07374562_07376423 MGC53997, TUBB4B, TUBB4A, TUBB, TUBB4B.L, TBB2C, TUBB2B coding upstream 103474 7374416 ~ 7376722 (-)
G484850 NA non-coding downstream 10983 7253329 ~ 7256986 (-)
G485000 NA non-coding downstream 143783 7123825 ~ 7124186 (-)
G484991 NA non-coding downstream 178584 7089021 ~ 7089385 (-)
G484826 NA non-coding downstream 263196 7000893 ~ 7004773 (-)
G484871 NA non-coding downstream 268994 6997811 ~ 6998975 (-)
G485034 NA non-coding upstream 58356 7329298 ~ 7330158 (-)
G485035 NA non-coding upstream 62585 7333527 ~ 7334274 (-)
G485038 NA non-coding upstream 66568 7337510 ~ 7337713 (-)
G484645 NA other downstream 1011857 6254331 ~ 6256112 (-)
G484702 NA other downstream 1243147 6021828 ~ 6024822 (-)
G484394 NA other downstream 1993699 5274086 ~ 5274270 (-)
G483481 NA other downstream 2414522 4851757 ~ 4853447 (-)

Expression


Co-expression Network