XLOC_013539 (exosc5)


Basic Information

Item Value
gene id XLOC_013539
gene name exosc5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 36060295 ~ 36066087 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026659
GAGCAGATTGTGCATGAGGACCGAGATGGAGCTGGAGCGAAGTTGTCCAGTTTTAAGAGAATATGGAAGTGAACAGAGTTTGTTATCAAGACCTGACGGGTCGTCCACGTTTGTACAAGgGGACACGAGTATCCTGGCTGGAGTTTATGGACCAGCTGAGGTTAAAGTCAGCAAGGAAATATATGATCGGGCAACTGTAGAGGTCCTTATACAGCCCAAAATGGGGCTTCCAAGTGTccgcgagcgagcgagagagcaGTGTGTCCGTGAGACTTGTGAAGCTGCCCTTCTGTTGACCCTTCATCCACGCTCTTCTCTCACGGTCATCCTGCAGGTCGTCCACGATGATGGATCTCTGCTGTCGTGTTGTCTAAACGCTGCCTGTATGGCTCTAATGGATGCCGGGCTGCCCATGAGCCGCCTTTTCTGTAGTGTGACCTGCGCCATTAGCAAAGAGGGCCAGATAATCACTGACCCCACAGCTCGACAGGAAAAGGAAAGTCGAGCGCTGTTAACATTTGCCATTGATAGCAATGAGCGCAATGTTTTGATGTCATCGACTACAGGCTCTTTTTCAGTGCAGGAGCTCCAGCAGTGCATCGCTATCAGTCAGAAGGCCTCGGAGCAAATCTTCCAGTTTTATAGGGATTCTGTCAAGCGGCGATATTCAAAGATGCAATAAAATATGCGTTGGGATTTTTTTTA
>TCONS_00026660
GAGCAGATTGTGCATGAGGACCGAGATGGAGCTGGAGCGAAGTTGTCCAGTTTTAAGAGAATATGGAAGTGAACAGAGTTTGTTATCAAGACCTGACGGGTCGTCCACGTTTGTACAAGgGGACACGAGTATCCTGGCTGGAGTTTATGGACCAGCTGAGGTTAAAGTCAGCAAGGAAATATATGATCGGGCAACTGTAGAGGTCCTTATACAGCCCAAAATGGGGCTTCCAAGTGTccgcgagcgagcgagagagcaGTGTGTCCGTGAGACTTGTGAAGCTGCCCTTCTGTTGACCCTTCATCCACGCTCTTCTCTCACGGTCATCCTGCAGGTCGTCCACGATGATGGATCTGTATCCTCAACACCAGCAAAACTCTTCTTTATAAATGCAAAATGAAGAGGGGGCAAATATGATGTGTCCGTGGTTTTATTGTTTGAACTTTTTAGTCACTTACCGTTGAAGGGAGGAGTTTGTTTTGAATA

Function

symbol description
exosc5 Predicted to be involved in RNA metabolic process. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Predicted to be active in nucleolus. Orthologous to human EXOSC5 (exosome component 5).

GO:

id name namespace
GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' biological_process
GO:0016075 rRNA catabolic process biological_process
GO:0071028 nuclear mRNA surveillance biological_process
GO:0071051 polyadenylation-dependent snoRNA 3'-end processing biological_process
GO:0034475 U4 snRNA 3'-end processing biological_process
GO:0000176 nuclear exosome (RNase complex) cellular_component
GO:0000177 cytoplasmic exosome (RNase complex) cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03018 RNA degradation
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-060503-675 Predicted to be involved in RNA metabolic process. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Predicted to be active in nucleolus. Orthologous to human EXOSC5 (exosome component 5).

Ensembl:

ensembl_id ENSDARG00000040557

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026659 False 705 mRNA 0.49 6 36060295 36066087
TCONS_00026660 True 486 mRNA 0.47 3 36063005 36066087

Neighbor

gene id symbol gene type direction distance location
XLOC_013538 opa3 coding downstream 217741 35838752 ~ 35842554 (-)
XLOC_013537 hnrnpul1 coding downstream 222622 35807588 ~ 35837673 (-)
XLOC_013535 ryr1b coding downstream 323704 35491473 ~ 35736591 (-)
XLOC_013536 CU138549.1 coding downstream 487000 35573181 ~ 35573295 (-)
XLOC_013534 itpkcb coding downstream 600299 35429333 ~ 35459996 (-)
XLOC_013540 b3gat1a coding upstream 39843 36105930 ~ 36135799 (-)
XLOC_013541 BX950224.1 coding upstream 389220 36455307 ~ 36465466 (-)
XLOC_013542 NA coding upstream 648552 36714639 ~ 36733902 (-)
XLOC_013543 NA coding upstream 783062 36849149 ~ 36887469 (-)
XLOC_013544 NA coding upstream 835934 36902021 ~ 36918987 (-)
XLOC_013384 BX323829.1 misc downstream 16518064 19542102 ~ 19542231 (-)
XLOC_013531 NA non-coding downstream 806273 35251298 ~ 35254022 (-)
XLOC_013530 NA non-coding downstream 1172223 34886240 ~ 34888072 (-)
XLOC_013529 NA non-coding downstream 1505678 34551528 ~ 34554617 (-)
XLOC_013527 NA non-coding downstream 1832396 34227352 ~ 34227899 (-)
XLOC_013550 AL627088.1 non-coding upstream 1343736 37409823 ~ 37415445 (-)

Expression


Co-expression Network