CI01000340_00559281_00560682


Basic Information

Item Value
gene id CI01000340_00559281_00560682
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 558024 ~ 560682 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_00559281_00560682.mRNA
CTTTAAAATGGGACTGAAATGCTGATTTATAGCAACAGTGATATTGGCATGACTGTTGACATGAGCAAACAGGTTTACGGACTGAATGCATTCTAAATAATGCTATCTGACAATTTGAATTATACTTTCAACATGATGAGGTCATGTGACAACAGTGTAGAAAACAACTGTTTAAATGTTAATAGTAGAATAATGCCTACTGTTTTACTTAGTAGGCAGTATAGTGTTTGTAACGGTTATGTTTGGTTTTGACATTCTGCTCAGTTTTCTTTAGTTTCTGTTTCCCCACTCTGCTTAGGGTACATTTACACGACAACAATGTACTAAAAATGGAAAAGTTTTTCCTTTGCATTTTTCGAGTACAAACAACACAACTGTCGAAACGATCCCCGTTCACACGGATCTGCGAAAACAACTAAAAATACTGTATTATGCATGCCATATCAGTAGTTGATGTCACTTTGTTAAGAAAATATCTGTGCCTATAGACTGAACACATAATACGCATGCACATGGCGTCACTGTTTTCACAAATTCACATTTTTGTAGTTTACATGCAGATGATAACAGTAGGCTATTGTTTTCAAAAATGTGCACTTTGAAACCCGTTTTCAAAAGTTTGCATTTTCATACCCCCAGAACTCATTACTCCCTAGTTTGTTTCTATGGTAACTCTTTGATTAATTGATTATCTTCACTTGTTCCTTATTTAGTTTCCTTTGTTTGTATTGTATACTCCTGTGTTTTAGTCACGCTTGGTCAGCTCTCATTTATGTATAGTGTGGTTTATGTTCCTGTGATGAATCTAATGTTCTCCTAAGTGTTTGTTTATTTATATCTTCTTTGTCTTCTTCGTGCGCTGCTACCACCACACAGTGTTTAGTGTGCTGTATTCAGCAAGTTTTAGGCTTGTATTTCATTCCAAACACTGCAAAGTGAACTATCACACACTTAAGCTTTTTACATGTTCAGCACCGTAAAAAGTGTAGCTTGCCATTGTTATTGTTATTTACCTGATCTTACACTTAAATTTAGCTTTGTTGGTATAACCTAGTATATTTAAGTTGGTTAAGTGATGTTAAATAACATTTTTCATTTAGATTCAAATAAAATCAATTAATTTAAATGTTATGAATTGAAGCAGGTTTTTTAAGTGAAGACCTGAGTGCTTTTCATGCTTTAAAATAGTATGAACTTAATTATCATGTATGTACTTATCAGTATGAACTTAGCTTGCATTTCCTTTTGTTTCGCAGGATGGATGACATCCAGTTATGTAAAGAAATTACAAGACTGAAGAAAGAGCTTCAAAAGCTTCTGTCTATCCCAGATAATGACAAGTCTAATGAAGATAAACAGAAAGAGGAAGAGCTTCTGAAACAGATTCATAAATTAGTGGAGGCCAGAGACTTCCTGGTAGATGACGTGGAGTTTGAGCGCCTCAGGGAACGGGAGGAAGACAAAGAGATGGCTGAGTTTCTTAAGTCCAAATTACCAAAAAGCTCTCAATCCAAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_00559281_00560682.mRNA True 1516 mRNA 0.35 3 558024 560682

Neighbor

gene id symbol gene type direction distance location
CI01000340_00529527_00543895 NA coding upstream 13516 529527 ~ 544508 (+)
CI01000340_00488669_00506008 NA coding upstream 51222 488669 ~ 506802 (+)
CI01000340_00330446_00342078 STX8 coding upstream 215946 330446 ~ 342078 (+)
CI01000340_00312480_00313262 NA coding upstream 244490 312212 ~ 313534 (+)
CI01000340_00174722_00176216 MCHR1A coding upstream 381520 173735 ~ 176504 (+)
CI01000340_00575085_00576868 GLULB, GLULA, GLNA, GS02, GLUL, GS01, GS04 coding downstream 13778 574460 ~ 577456 (+)
CI01000340_00630670_00634136 NA coding downstream 69865 630547 ~ 634231 (+)
CI01000340_00672283_00673853 GADD45AB, GADD45A coding downstream 111601 672283 ~ 674492 (+)
CI01000340_00710056_00726924 NA coding downstream 149148 709830 ~ 727495 (+)
CI01000340_00883803_00902915 NA coding downstream 322719 883401 ~ 903402 (+)
G485551 NA non-coding upstream 81159 476629 ~ 476865 (+)
G485520 NA non-coding upstream 232329 325359 ~ 325695 (+)
G485511 NA non-coding upstream 259584 298017 ~ 298440 (+)
G485441 NA non-coding upstream 315365 226223 ~ 242659 (+)
G485443 NA non-coding upstream 336742 220756 ~ 221282 (+)
G485564 NA non-coding downstream 11025 571707 ~ 572179 (+)
G485614 NA non-coding downstream 118485 679167 ~ 679379 (+)
G485600 NA non-coding downstream 119641 680323 ~ 681788 (+)
G485616 NA non-coding downstream 121287 681969 ~ 682218 (+)
G485618 NA non-coding downstream 122021 682703 ~ 682992 (+)
G485427 NA other upstream 390390 163286 ~ 167634 (+)
G485373 NA other upstream 444255 106885 ~ 113769 (+)
CI01000340_02930635_02933799 LSM2 other downstream 2369409 2930635 ~ 2933935 (+)
G487133 NA other downstream 3413233 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 3838737 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 4103627 4659584 ~ 4669322 (+)
G489634 NA other downstream 6133539 6694221 ~ 6700788 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032035 pik3r6a coding NC_007117.7 CM002890.2 23712911 ~ 23781581 (+)