CI01000340_00787534_00791061


Basic Information

Item Value
gene id CI01000340_00787534_00791061
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 786551 ~ 791409 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_00787534_00791061.mRNA
AAAAAGAATACTTACAGTTACAGAACTGCTGCGGATGATACAGAAGACTTGGGAAAATAGGCAAGCATTAGAAAAAAATGCCATGGGAAACTATCACAGGAAACAAAATGACAGGGTGTTTGGTTGAACACCATTGTCTTTCTTGAATTATTTTGTGCAAAGTAGCAGGGAAATCAGGCTTAGTATAGGTAAAAAAATTATTCCATCTGGAGTCTTTATACTAGCATTCTAGAGTTTGACTGTGTGCTGCTTTTGTACACTGGCCACTAACAGAGAGGATGAGTAAGTGTAAGAAAGAGCTGAGTGAGAGAGAGAAAGAACGGTTGCTCATCCGTAGGGCCAGCGGAGCCAACGCCTCTCAGCTGGCTCATATGGAGAAGATGCTACAAGAAACCAAAGGCCTGCTGGAGAAGAAGACAGAAACGGATTCAGAAAGCAAAGCCTGTGGTGACACTATGGTGTCTGATCTGGAGCAGAAGGTCCAGCGCAGCAAGCGAGACCGTCGTAACTCCCTCCATCGCACACAGCTGCTGGAGAGTCAGATGAAGACGGTTCGCGGTGAGCTTGTGGGCACGCTGGACCACCTGGAGGAACTGCGCAACATATTGCGACGCTCACAGCAGAAATCAGAAGAGCGAGAAGCAGCCATGCAAAAACTTGCTGCAGGCCTGAGGTGAGGCAACAGCTGTCCACCTTCAGTTCATGGGTTACCACAACTCTCATCGTGAAGACTTGAGACACCACTGTTCATCTGAAATATTTGTTTGACTGCACATCCAGAATGTCATCATTTTTCACATTGGCTCACACATTCCTGTGCAACCAGATGCTGTTGTAATATCTCTGGTAAATAATTAAAGCATGCCACAGTTATTTAAAGGGCATGTGTTTACCCTCCAAAGATAGACAGTTTCTGAAGTGTGTGTCTGGTAGCATCCTGTTTTTATTTCCTGTTTTCACTGAAATGCAACCTTAAACCACAATTTACAATTTAAGTATATAGACATCCACTTAATGCCCTGTTAACTTGTGAAATAAA
>TU557495
TTTGTTTGCCTGCAGGCTAAATTTGCTCTCGATAACAAGTATAAAAGAACACCATCTTCTCATTCTTATCAAAAAGAATACTTACAGTTACAGAACTGCTGCGGATGATACAGAAGACTTGGGAAAATAGGCAAGCATTAGAAAAAAATGCCATGGGAAACTATCACAGGAAACAAAATGACAGGGTGTTTGGTTGAACACCATTGTCTTTCTTGAATTATTTTGTGCAAAGTAGCAGGGAAATCAGGCTTAGTATAGGTAAAAAAATTATTCCATCTGGAGTCTTTATACTAGCATTCTAGAGTTTGACTGTGTGCTGCTTTTGTACACTGGCCACTAACAGAGAGGATGAGTAAGTGTAAGAAAGAGCTGAGTGAGAGAGAGAAAGAACGGTTGCTCATCCGTAGGGCCAGCGGAGCCAACGCCTCTCAGCTGGCTCATATGGAGAAGATGCTACAAGAAACCAAAGGCCTGCTGGAGAAGAAGACAGAAACGGATTCAGAAAGCAAAGCCTGTGGTGACACTATGGTGTCTGATCTGGAGCAGAAGGTCCAGCGCAGCAAGCGAGACCGTCGTAACTCCCTCCATCGCACACAGCTGCTGGAGAGTCAGATGAAGACGGTTCGCGGTGAGCTTGTGGGCACGCTGGACCACCTGGAGGAACTGCGCAACATATTGCGACGCTCACAGCAGAAATCAGAAGAGCGAGAAGCAGCCATGCAAAAACTTGCTGCAGGCCTGAGGTGAGGCAACAGCTGTCCACCTTCAGTTCATGGGTTACCACAACTCTCATCGTGAAGACTTGAGACACCACTGTTCATCTGAAATATTTGTTTGACTGCACATCCAGAATGTCATCATTTTTCACATTGGCTCACACATTCCTGTGCAACCAGATGCTGTTGTAATATCTCTGGTAAATAATTAAAGCATGCCACAGTTATTTAAAGGGCATGTGTTTACCCTCCAAAGATAGACAGTTTCTGAAGTGTGTGTCTGGTAGCATCCTGTTTTTATTTCCTGTTTTCACTGAAATGCAACCTTAAACCACAATTTACAATTTAAGTATATAGACATCCACTTAATGCCCTGTTAACTTGTGAAATAAAATTCACACCCTGTCATATTTGACATGTTGTGGTGCCAATTTACCATGTGTGTGATGGCTTCAGGCAAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATCTTCACAGGATTTGTTTTGTAAAACAAAACAGATTGTGTACAATGTCTTAGCTTTGAGTTGCTTTATATGTGGTATAAGGAAAGTGTCAAATGAGTCCAGCATTTCTTGATATATATAGTCACCTATATTCATAGCTGCTTTTGCCTTTTTATTTTTTATAAGGTTTATTTCTGTGAACTTTTACATGATCTGCAATATTACAGTAGCCTACGTGCTTTTTCAACATTATTTTTAATCACCAATTCAGTAATGTAGGTACACTTTAAAGATTGTGTGTGTTTATGATTTTATTCATTAAAATATTGATATGTCCTCTAGGTTGTACTTTATGAAAAGAAAACAGAAACTTTATATCCATTTCAGTTGTGGATTTCCTCCCCTTATATCCTAAAGATCACTTTTTCATGTTGCTTTGAGGAGGTTTAGTATAAGATTCAATCCTAAATCTACTTTTCAGATCCTCTGCTTTGACTGAAGTTCTCTCATACTTCGTGACCTCATTCCCCTCTTGGTAGCGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_00787534_00791061.mRNA False 1039 mRNA 0.44 2 787172 791339
TU557495 True 1730 TUCP 0.39 2 786551 791409

Neighbor

gene id symbol gene type direction distance location
CI01000340_00764259_00771823 SCINLA coding downstream 13874 763712 ~ 773298 (-)
CI01000340_00750353_00755174 RDH8 coding downstream 31998 750139 ~ 755174 (-)
CI01000340_00739436_00741531 DR1 coding downstream 45535 738405 ~ 741637 (-)
CI01000340_00683967_00684845 GBG12, GNG12, GNG12.L, GNG12A coding downstream 102327 682794 ~ 684865 (-)
CI01000340_00641314_00671233 SEC16B coding downstream 115939 641293 ~ 671233 (-)
CI01000340_00798980_00828835 NA coding upstream 7641 798980 ~ 828835 (-)
CI01000340_00840521_00859645 EPHX4 coding upstream 48735 840074 ~ 859645 (-)
CI01000340_00878949_00880017 NA coding upstream 86433 877772 ~ 882231 (-)
CI01000340_00922398_00926008 NA coding upstream 130734 922073 ~ 926926 (-)
CI01000340_01119764_01121682 NA coding upstream 328350 1119689 ~ 1123636 (-)
G485888 NA non-coding downstream 98148 688022 ~ 689024 (-)
G485800 NA non-coding downstream 110776 574396 ~ 676396 (-)
G485805 NA non-coding downstream 288165 496677 ~ 499007 (-)
G485852 NA non-coding downstream 306393 479425 ~ 480779 (-)
G485954 NA non-coding upstream 140262 931601 ~ 932122 (-)
G485962 NA non-coding upstream 151068 942407 ~ 943669 (-)
G485986 NA non-coding upstream 186849 978188 ~ 978858 (-)
G485947 NA non-coding upstream 194634 985973 ~ 1011769 (-)
G485951 NA non-coding upstream 195887 987226 ~ 988409 (-)
G485786 NA other downstream 461456 325334 ~ 325716 (-)
CI01000340_00062787_00080635 NA other downstream 705077 62780 ~ 82095 (-)
G487884 NA other upstream 1104462 1895801 ~ 1902272 (-)
G488782 NA other upstream 3214466 4005805 ~ 4006448 (-)
G488862 NA other upstream 3715857 4507196 ~ 4518120 (-)
CI01000340_04598932_04627160 NA other upstream 3808881 4598714 ~ 4627447 (-)
CI01000340_05321995_05329778 ATG4C other upstream 4529414 5320753 ~ 5330215 (-)

Expression


Co-expression Network