CI01000340_01119764_01121682


Basic Information

Item Value
gene id CI01000340_01119764_01121682
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 1119689 ~ 1123636 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_01119764_01121682.mRNA
CGCTTCAGAAACCACACCGAGTGAACATGACAGTAATCCAGTGGATGAATCAATGTGACAAATAGGTGTGTGTGAGAAAAAGGCTAATTTTTAAAACTTTATTTAACTATAAACTATTGATTCAGGCCAGCTGTCACGTGCAGGGACCATCACTTCTCGCGTGAGTTTTACAACTTGCTGACTTGCATGTAATGCATGCAAAGTGCAATATCGCTATCGATATTGCTGCTCACGTATTTCGAAATTAGTTTTACTCCTAAATGAAGAATGATAAAGAACTTTGCCATGAGTATATCGGGGCCTTAAGTCTTTTTTATATGAGCAATATCACACGAGTAGCCGTGCGATATTGGCTGTATATCAACATGGCTGTGATTCGGCTGTAGGTAATCACAGCGTGCTGATTTACAGCCATATCGGATGGCTGTGAGATTGCGCTTAAACAGAAGTTCAATGGCACATGTGTAAATAAATAAAAAATAACAACGGAGTGTCTTTAAAACCCTCTTTTGTGCAGAACTACTTCCTTCCAACACGGCTTCAAATCTCAAGTTGACAGTTTGACCAAGCCGTCTAAAAACGTCACTTTAGAACTAGTAACGAAGGAATGTTGAGTCCCTCCATTGAAACTCATTGTATTTTGTACAGTATTATTGAGAGAGAGAGAGAGAGAGAGAGAGAGATCGCCTGAGCGAGCATTACCTGTGTCTGATATAACATTCATTCTTCAGGTCGATGTCCATAATATTATATCCATTATAAAAATCAGTTTGAATGTCCGCTGAGGGAAGCGATCTTTGTATTTGTCCTTTTAACAGTTAAGGGAATTTTTCATAACAGCGCTAAAACAGCGTCCTTTGTTTACAAAAGTCCCTTTCAATTTAAAAGTCTCTTGGGACTGACTTATTCACTCGTAAAATTTGATTAATAGACCCTTTCTCAATACCAAATAAAACATATTTTTTATATAAAACAACATTTATTGAACAACAATATTTAAATTAACAATAATAGCCATTATTAATGACAATTTGAAATAAACACAATTGTACAATTCAGTCAAACGTACAAAAGCAGTGCTTTACAGGATGTAAGTTAAATATAGCCTTAATATTAAACAATTAAATTTAAAATAGCCCAATTCGATTTGCTCATGAACAAGTAATACAAGTAATAGATTAATAAGACCAAAGATTGCCTGTTTTATGTACCCAAAATGAATTATATCTCATGTTTTGTGGTATAACATATGTAGTACTTGTAAAAAAATTCGGTGTATTTGCTCGCCCGCCATGACAGTAGCTTCAAGCGGAGTGATACAAACGGTGAAACAGTTCCCGTGGCAATACTGGTAGAATATCGCATGGCTGGTAGATTCAAGAACCAGAACGAACTGTTGTATAAAGTGTATAAAGTGCCAACCAACAACAATGGTGAATCATAACATTACAAACTTTGATTTGAAGCAAAAAAAAAATTAAAAAAAAAAAGTATTTTGAAAATCCGGACAAAAATATAAAGGTACAATATTGTGTACTTAATGGCTTATTTAACTACAATCCTATGAAGCATTACAAACAGCATAACTGAATTAAAAATGATGGAGAAATATAAAACTATTCATTTAAAAATGTAGATTATATATATATAAAAATATGTTTAAGCTTATTGCAAAATATGCTTATATATTCAAATATTTAAGTCTTTGAGAGCGTAGGGAGACCAACTCGATAAAGTAATTTGCAGTGCTTCATGGGAGTGGGTGGAGCTAACAAAATTTTTGGTGCATTTTGCTTGTTTCGACTCTGGTAGAATTTTCTGTACAGCATCATGAGTAATGTAGCTTTTCACCATGTATTCCACTGTTAAACATGATTATTTTGAGTTGAAGTCATGAATCATCAAGTCATCAGAATGACTATACTTCATAGTTTATATGGGCAGAAAAAGGAAGATGGGCAAATGCGCTGCTCGCATCCTATGCCTTTATTTGCTGTTTATTCCCAGTTCTAGGGGTATAGAAGTAGTACCAGGCACTAGTTTGCGAGAGGAATCTATGGGAACACTGGAGAGAGGTGGAATCCGATACCAGCCTGGATGTCCTTGGCTCGGTAACACCAGGGTACTGAGGCATCCAGCCTTCCTTGCATGCCGCTTCCCCTGGCATTTACTCCTGTCCGGCTTTAGGGTCGCTTTGGATGATGATGAATGGCATCGCAATCAGCAATCAGATGACCTGCATCTAGACAGTAGAAACATACTCGCCCCTCACAAGATCGACTTTTTGCAGATCTGTCCCTTCCATATGCCCGACCTCGGCTATATCTGGTTTTACCATCTCTACCTCCCTTCACCTGCGTTTCAGTACTATGGACAGCTACTTTATCAAACCTCCCCACTGGAAAAAAAAAAACACAGTTCGATGGGTCAATACGAACTCATCTGCGAGTACAGCGGCTGCTGAGAGAGACGTCACTTTCTGTTCATTCAAATGTACCACCAAGTTTTCATGAGCACAACCTCTGAATCCTCCAATAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106512535, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_01119764_01121682.mRNA True 2539 mRNA 0.37 2 1119689 1123636

Neighbor

gene id symbol gene type direction distance location
CI01000340_00922398_00926008 NA coding downstream 192763 922073 ~ 926926 (-)
CI01000340_00878949_00880017 NA coding downstream 237458 877772 ~ 882231 (-)
CI01000340_00840521_00859645 EPHX4 coding downstream 260044 840074 ~ 859645 (-)
CI01000340_00798980_00828835 NA coding downstream 290854 798980 ~ 828835 (-)
CI01000340_00787534_00791061 NA coding downstream 328350 786551 ~ 791409 (-)
CI01000340_01339075_01340999 NA coding upstream 214704 1338340 ~ 1341487 (-)
CI01000340_01356603_01359427 NA coding upstream 232824 1356460 ~ 1359427 (-)
CI01000340_01375418_01382944 ZNF326 coding upstream 251406 1375042 ~ 1382944 (-)
CI01000340_01385672_01396802 LRRC8DB, LRRC8D coding upstream 261113 1384749 ~ 1398796 (-)
CI01000340_01400601_01408156 LRRC8C coding upstream 275820 1399456 ~ 1408156 (-)
G486035 NA non-coding downstream 28149 1091220 ~ 1091540 (-)
G486031 NA non-coding downstream 31813 1087619 ~ 1087876 (-)
G485996 NA non-coding downstream 106861 1012476 ~ 1012828 (-)
G485947 NA non-coding downstream 107920 985973 ~ 1011769 (-)
G485951 NA non-coding downstream 131280 987226 ~ 988409 (-)
G486110 NA non-coding upstream 26456 1150092 ~ 1150317 (-)
G486153 NA non-coding upstream 89413 1213049 ~ 1223455 (-)
G486267 NA non-coding upstream 126846 1250482 ~ 1251964 (-)
G486289 NA non-coding upstream 162999 1286635 ~ 1286931 (-)
G486276 NA non-coding upstream 308808 1432444 ~ 1432671 (-)
G485786 NA other downstream 793973 325334 ~ 325716 (-)
CI01000340_00062787_00080635 NA other downstream 1037594 62780 ~ 82095 (-)
G487884 NA other upstream 772165 1895801 ~ 1902272 (-)
G488782 NA other upstream 2882169 4005805 ~ 4006448 (-)
G488862 NA other upstream 3383560 4507196 ~ 4518120 (-)
CI01000340_04598932_04627160 NA other upstream 3476584 4598714 ~ 4627447 (-)
CI01000340_05321995_05329778 ATG4C other upstream 4197117 5320753 ~ 5330215 (-)

Expression


Co-expression Network