CI01000340_01322847_01325739


Basic Information

Item Value
gene id CI01000340_01322847_01325739
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 1322847 ~ 1327211 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_01322847_01325739.mRNA
ATGTCATTTGAGTACCTGCTGAACAGTGGTGTAGAGCGACCTACCAGTGTAACGACCAAAGCAATGAGTACTGCACTGTCCTGTGACTGCAAGAAAGCAGAGGTGTTGCTAAACTTAGTGAGAAGCCAAGACGACGGGTGCAGCGATGGAGTGGCGAAAGCAGGAAGGTCAGTAACAAAAATTCCAGTCAAACAGGCTAGAGCTGTCAAATGTTGTATCAAAACAGGCCCTTTACTATCTGACCATGCTCTTTTTGTTGCGGATGAGTGCGCGAAGTGGCCAGACAGATTGAGGGTGGAGGAAAACATTGTCCGCCTACAGATAGGGACCTGTTCACCTATCTGCATTTCTGTAATTAATGATTCTGTTCATGACATCGACCTGCCTCCATGGGCAGTTCTGGGCCATATACAGCAGGTAAAAGCCATCTACCCTGCTGAGATGAGACCAGTGACAGTCCAGCAGGAGATTGCCTGCACGACTGCAGCACACACCACTCAAAGCCTGTTCCATAAAGACAGTGAACGAGTCACCCAAACTACAGGAAACGCGGATGCGATGTTAACGATTCAAAAGGAGGGCTTATGGGACCATCCTATTCACTCGTACATTGAGAACTTTTCCCGCAAGGCCACACCTCTTTACATGCTGCTCACCGAAACGAAGACACCAAAGGGGAAAGTACAGCCAAAGCAGCAGAGCAAGGGGAAAAATTTCCAAGGACAGCTTGCATCATCACATCCAGTCACATGGACAGATGAATATAAAAAGTTCTCTGAAGGCCTTGGTGCAGTGCTGTATCAAAGGCAAAGTGGCAAGTTAGTGGTGATAGCGTACGGATCAAGAACCCTAACCACTCCTGAGAAAAACTACCATCTTCAATCTGGAAAGTTGGAGTTTTTGGCCATGAAGTGGGCCATATGTGAGCGGTTCAGGGACTATGCCTATCATGCCCCATCATTCATTGTGTACACAGACAATAACCCTCTCACGTATATGGAACAATACATGAAAACCTGTTCAGAAGAAGTGCACCCTAACGTCATGCTCAGTATAACTCAGTCAGCAATGGTACAGAGTCAGGAGAAAGGGCCATGGTTGTGTCCACTTACCATTGAAACAGCGTTGTCAGGAGAACAGGAGGAGGAGCTGCTCACGTCAGTTACAGAGATCCCCAAGGAAGTTCTGAGAAAAGCCCAAGAGGAAGACCCTGAAATCAGAAGTCTTGGCTTTGGGCTCCCAACAAAACTGCACCACGACCAAGACAAAGAATTTGACAAGAAGTTGTTTACCAAGTTGCAAGAGTACAGTGGTGTGCAAGGCTTCCATACAACACTGTATCACCCGCAGGGGAATGGTGAAGTTGAGCAGTTTAACCAAACTTTGCTAGTAATGCCGAGGACCTTACCTGAGAACGTCAAAGCCGACTGGAAGACGTCACTTGCAAAGGTGGTGAATGTGTACAACTGTACCTGTACAGCACCCTATTTTCTCCTGTTCGGCTGTGCTCTCAGATTGCCCATTGATATTATGTTTGGTGTACCAGTGAAATTCTAAAACTCCTCATACCATAACTATGCTGAGGACTGGAGGAAGAGGAACTGATGGAAGCTTACAAGGTAGCCTCAAGAGTATCGCACAAAAAGAAGGAAAGAGGAAAATCTTTGCATGATAGGAAATTTTTATTTTTGGGTGAACTATCCCTTTAACATACATCCAAGAATTCTATACACCACTCTGTTATTGTAGGGATATCGACTTTACATTTTCACACCCCTAAACATGACACGGAACAAAACAAACTGTGATTGGTTGCTTTACATGTCAGTCAGATGGTCCTGAGCCAATGAAAGCTGCTATGGAGTCCAGACCTTCTGCCGTCAGTCTGAAGGTCCGGCTACACGAGACTAGGATTGAAATATTTGCATGAATTTTAGCATTTTATTTTATATTTTGTGGTCCCATACAGACACATACAGTGTAAACCATATGCATAAGCGATTGCACAAATTCAATTTTCTGTGGTTTTAGAGATAATTTGTACTTTGAAAAATCAGAACTCTGAGCCTATAACTGAACATCGGATATAATGACTTCTTCACACTCTGAGTTAATCTGTTTATAAATGCTGATCATAAAACACTACAATGCTTCAGTTTAAGTTGTAAAAAAAAATCTGCAGCAATAAGCATACCAATGACTTGCTGCTTTTTAAAAAGCCCCAGAGAGACAGTGACATCCTCCTTGGTTTAAATGACACATTTGTGGTGTACCAACAAGCCATACACAGCAAATTTCAGTTTGTGCTTGTAAAGCAATCCCTCCCAACAGTGAGGTATAGAGTGAGAATCTCTGCCCGCCATTAGTGAAGCGGTTAAGATGATGAGAACAGTCCCTCTACTCCCAAAGCTGTCCCCAACGGCAATGTGTCCCTGTGTTCCCCTCACCTTTTTTATCTGCAGACTTTGACAAGAGAGACCAGAATCCCACAGATCTATTTGGCATCATCACTGAGTCACTCACAATATGTAAATATATGAGAGGGGATCTGTTCCTTCATCCATTATAGATGAAGGAAACCCAAAACTGGGAAATAGGTCCCTTTAACCGTCAGTCTCGTGCCCTTTGTGCCCGTGGCTACAGAGCCAAAAACTGTACTTAGAGTCACTCACTGTACTATCTTGATGGCTTATTCGTATTAAAGTTGTTACAACTTGCATGCAAATCTACATATTTATTTTCAGCAACTGTAATCCACAATTTAATCTTAGATTTCATCATAATATTTATAATAATGGTAATTTACTAAATATTATACTGTAATGTTAAATGTTTTGTAATACTCTGCACTCACACACCCATGCTTATAGAATGTTTTTTAATAATCAAGAACTAAATTCTTCCATCAAATGTAGCATGGTATGCATATTTGGATGTATCTGCTGCCTGATAGCATCACAAGAACATGCAGTGCCTTCAGTTCACTAGCAATTATCATGTTTAACTAGCTGTGATGTCAAAGACAACTA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_01322847_01325739.mRNA True 3029 mRNA 0.43 5 1322847 1327211

Neighbor

gene id symbol gene type direction distance location
CI01000340_01146151_01149216 BARHL2 coding upstream 173370 1145162 ~ 1149477 (+)
CI01000340_01065200_01074925 ZNF644B coding upstream 247694 1064649 ~ 1075153 (+)
CI01000340_00927319_01001912 TGFBR3 coding upstream 320935 927319 ~ 1001912 (+)
CI01000340_00883803_00902915 NA coding upstream 419445 883401 ~ 903402 (+)
CI01000340_00710056_00726924 NA coding upstream 595352 709830 ~ 727495 (+)
CI01000340_01343319_01351087 NA coding downstream 14862 1342073 ~ 1351623 (+)
CI01000340_01426152_01431129 NA coding downstream 98941 1426152 ~ 1431147 (+)
CI01000340_01627145_01646966 NA coding downstream 299323 1626534 ~ 1647125 (+)
CI01000340_01691376_01694051 NA coding downstream 363888 1691099 ~ 1694848 (+)
CI01000340_01708371_01768517 NA coding downstream 380959 1708170 ~ 1769020 (+)
G486170 NA non-coding upstream 70872 1250499 ~ 1251975 (+)
G486080 NA non-coding upstream 189523 1133117 ~ 1133324 (+)
G486076 NA non-coding upstream 191663 1130974 ~ 1131184 (+)
G486046 NA non-coding upstream 213659 1108856 ~ 1109188 (+)
G485733 NA non-coding upstream 277353 1045275 ~ 1045494 (+)
G486203 NA non-coding downstream 47704 1374915 ~ 1382110 (+)
G486224 NA non-coding downstream 68704 1395915 ~ 1396152 (+)
G486225 NA non-coding downstream 69491 1396702 ~ 1397020 (+)
G486234 NA non-coding downstream 91615 1418826 ~ 1419075 (+)
G486235 NA non-coding downstream 93017 1420228 ~ 1420798 (+)
CI01000340_00312480_00313262 NA other upstream 1009602 312212 ~ 313534 (+)
G485427 NA other upstream 1155213 163286 ~ 167634 (+)
G485373 NA other upstream 1209078 106885 ~ 113769 (+)
CI01000340_02930635_02933799 LSM2 other downstream 1602880 2930635 ~ 2933935 (+)
G487133 NA other downstream 2646704 3973915 ~ 3982545 (+)
CI01000340_04399692_04401164 NA other downstream 3072208 4399419 ~ 4401496 (+)
CI01000340_04660938_04668996 NA other downstream 3337098 4659584 ~ 4669322 (+)
G489634 NA other downstream 5367010 6694221 ~ 6700788 (+)

Expression


Co-expression Network